Evidence map›Paper›PMID 40667197›Full record

ArticlebioRxiv : the preprint server for biology2025

EZ-FRCNN: A Fast, Accessible and Robust Deep Learning Package for Object Detection Applications from Ethology to Cell Biology.

Erin Shappell, Jacob M Wheelock, Guillaume Aubry, Hang Lu

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Erin ShappellInterdisciplinary Program in Bioengineering, Georgia Institute of Technology, Atlanta, GA, USA.ORCID 0000-0003-4401-2233
Jacob M WheelockInterdisciplinary Program in Bioengineering, Georgia Institute of Technology, Atlanta, GA, USA.ORCID 0009-0006-5949-1301
Guillaume AubrySchool of Chemical and Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA, USA.ORCID 0000-0001-7828-8508
Hang LuSchool of Chemical and Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA, USA.ORCID 0000-0002-6881-660X

Funding

Inferring multi-scale dynamics underlying behavior in aging C. elegansR01AG082039 · NIA · GEORGIA INSTITUTE OF TECHNOLOGY · PI Gordon Joseph Berman, Hang Lu · 2023 to 2026
$2.1M
Integrative and Quantitative Biosciences Accelerated Training EnvironmentT32GM142616 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI James C. Gumbart, Peng Qiu · 2021 to 2026
$1.8M
NIA NIH HHS R01 AG082039NIGMS NIH HHS T32 GM142616
6 · The paper itself

Abstract

Advances in high-throughput imaging and experimental automation have dramatically increased the scale of biological datasets, creating a growing need for tools that can efficiently identify and localize features in complex image data. Although deep learning has transformed image analysis, methods such as region-based convolutional neural networks remain underutilized in biology due to technical barriers such as coding requirements and reliance on cloud infrastructure. We present EZ-FRCNN, a locally hosted, user-friendly package that enables the accessible and scalable application of object detection to biological datasets. Through graphical and scriptable interfaces, users can annotate data, train models, and perform inference entirely offline. We demonstrate its utility in detecting cell phenotypes for large-scale screening, enabling the first label-free tracking of grinder motion in freely moving

Identifiers

PMID40667197
PMCPMC12262326

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.