Evidence map›Paper›PMID 40667023›Full record

ArticlebioRxiv : the preprint server for biology2025

ERSAtool: A User-Friendly R/Shiny Comprehensive Transcriptomic Analysis Interface Suitable for Education.

Sujith Taridalu, Ayyappa Kumar Sista Kameshwar, Masako Suzuki

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Sujith TaridaluDepartment of Nutrition, Texas A&M University, College Station, TX, USA.
Ayyappa Kumar Sista KameshwarDepartment of Nutrition, Texas A&M University, College Station, TX, USA.
Masako SuzukiDepartment of Nutrition, Texas A&M University, College Station, TX, USA.ORCID 0000-0003-0605-9225

Funding

Investigating the effect of dysregulated vitamin D metabolism on kidney development following preterm birthR01DK136989 · NIDDK · UNIVERSITY OF VIRGINIA · PI Jennifer R Charlton, Kimberly Jean Reidy · 2024 to 2026
$2.1M
IMPACT OF PRENATAL VITAMIN A DEFICIENCY ON CELL FATE ALTERATIONS IN ADULT AIRWAY HYPERRESPONSIVENESSR01HL145302 · NHLBI · TEXAS A&M AGRILIFE RESEARCH · PI SUZUKI, MASAKO · 2020 to 2023
$1.6M
NHLBI NIH HHS R01 HL145302NIDDK NIH HHS R01 DK136989
6 · The paper itself

Abstract

RNA sequencing (RNA-seq) has become an essential technology for assessing gene expression profiles in biomedical research. However, the coding complexity of RNA-seq data analysis remains a significant barrier for students and researchers without extensive bioinformatics expertise. We present the

Indexed as

Differential gene expressionEducational toolFunctional enrichmentInteractive visualizationRNA-seq analysisShiny applicationTranscriptomics

Identifiers

PMID40667023
PMCPMC12262570

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.