Evidence map›Paper›PMID 40666867›Full record

ArticlebioRxiv : the preprint server for biology2025

Epilogos: information-theoretic navigation of multi-tissue functional genomic annotations.

Jacob Quon, Alex Reynolds, Nalu Tripician, Eric Rynes, Athanasios Teodosiadis, Manolis Kellis, Wouter Meuleman

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jacob QuonAltius Institute for Biomedical Sciences, 2211 Elliott Avenue, Seattle, WA 98121, USA.
Alex ReynoldsAltius Institute for Biomedical Sciences, 2211 Elliott Avenue, Seattle, WA 98121, USA.
Nalu TripicianAltius Institute for Biomedical Sciences, 2211 Elliott Avenue, Seattle, WA 98121, USA.
Eric RynesAltius Institute for Biomedical Sciences, 2211 Elliott Avenue, Seattle, WA 98121, USA.
Athanasios TeodosiadisAltius Institute for Biomedical Sciences, 2211 Elliott Avenue, Seattle, WA 98121, USA.
Manolis KellisComputer Science and Artificial Intelligence Lab, Massachusetts Institute of Technology, 32 Vassar St, Cambridge, MA 02139, USA.ORCID 0000-0001-7113-9630
Wouter MeulemanAltius Institute for Biomedical Sciences, 2211 Elliott Avenue, Seattle, WA 98121, USA.ORCID 0000-0002-1196-5401

Funding

Elucidation of the organizing principles of the regulatory genome through large-scale data integrationR35HG011317 · NHGRI · ALTIUS INSTITUTE FOR BIOMEDICAL SCIENCES · PI MEULEMAN, WOUTER · 2020 to 2024
$1.8M
NHGRI NIH HHS R35 HG011317
6 · The paper itself

Abstract

Functional genomics data, such as chromatin state maps, provide critical insights into biological processes, but are hard to navigate and interpret. We present Epilogos to address this challenge by offering a simple information-theoretic framework for large-scale visualization, navigation and interpretation of functional genomics annotations, and apply it to over 2,000 genome-wide chromatin state maps in human and mouse. We construct intuitive visualizations of multi-tissue chromatin state maps, prioritize salient genomic regions, identify group-wise differential regions, and enable rapid similarity search given a region of interest. To facilitate usability, we provide a purpose-built web-based browser interface (http://epilogos.net) alongside open-source software for community access and adoption.

Identifiers

PMID40666867
PMCPMC12262391

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.