Evidence map›Paper›PMID 40665466›Full record

ArticleGigaScience2025

The telomere-to-telomere gap-free reference genome and taxonomic reassessment of Siniperca roulei.

Min Jiang, Chenxi Zhao, Fengjiao Ma, Denghua Yin, Chenhe Wang, Jianbo Jian, Kai Liu

Abstract read
In one paragraph

Article in GigaScience, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Min JiangKey Laboratory of Freshwater Fisheries and Germplasm Resources Utilization, Ministry of Agriculture and Rural Affairs, Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences, Wuxi 214081, China.ORCID 0000-0002-8412-6043
Chenxi ZhaoBGI Genomics, Shenzhen 518083, China.ORCID 0000-0002-1733-4619
Fengjiao MaWuxi Fisheries College, Nanjing Agricultural University, Wuxi 214081, China.ORCID 0000-0003-4449-6311
Denghua YinKey Laboratory of Freshwater Fisheries and Germplasm Resources Utilization, Ministry of Agriculture and Rural Affairs, Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences, Wuxi 214081, China.ORCID 0000-0002-1193-5333
Chenhe WangBGI Genomics, Shenzhen 518083, China.ORCID 0000-0003-1382-5493
Jianbo JianBGI Genomics, Shenzhen 518083, China.ORCID 0000-0003-2187-5490
Kai LiuKey Laboratory of Freshwater Fisheries and Germplasm Resources Utilization, Ministry of Agriculture and Rural Affairs, Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences, Wuxi 214081, China.ORCID 0000-0002-5730-3040

Funding

Chinese Academy of Fishery Sciences, Central Public-Interest Scientific Institution Basal Research Fund, CAFS 2023TD11Chinese Academy of Fishery Sciences, Monitoring of Aquatic Living Resources in Jiangsu Section in the Mainstream of the Yangtze River JSZC-202209051607
6 · The paper itself

Abstract

Siniperca roulei is primarily distributed in the eastern waters of China, with its population being both scarce and vulnerable. Research on this species remains limited, with few studies conducted on its biology and genetics, which hampers efforts to conserve its germplasm resources. To support breeding and conservation efforts, we generated a gap-free genome assembly using a combination of DNBSeq short reads, PacBio HiFi long reads, Nanopore ultra-long reads, and Hi-C data. The nearly telomere-to-telomere (T2T) genome of S. roulei spans 717.34 Mb, with a contig N50 of 30.25 Mb, and each chromosome is represented by a single contig. A total of 26,596 genes were predicted, with 87.97% functionally annotated. These high-precision genomic data provide valuable insights into the germplasm resources of S. roulei, offering crucial information for clarifying the taxonomic status and evolutionary history of sinipercids. These findings are significant for the conservation and sustainable use of its germplasm resources.

Indexed as

Genome, PlantTelomereChinaGenomicsMolecular Sequence AnnotationPhylogenychromosome-level genome assemblyphylogenySiniperca rouleitaxonomic reassessment

Identifiers

PMID40665466
PMCPMC12263216

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.