Evidence map›Paper›PMID 40665008›Full record

ArticleScientific reports2025

Developing angiogenesis-related prognostic biomarkers and therapeutic strategies in bladder cancer using deep learning and machine learning.

Yutong Li, Ling Zuo, Xingyu Song, Yuyang Huang, Ke Zou, Xuan Dong, Hongwei Liu

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yutong Li *Laboratory of Urology, Affiliated Hospital of Guangdong Medical University, Zhanjiang, 524001, Guangdong Province, China.
Ling Zuo *Department of Traditional Chinese Medicine, The Second Affiliated Hospital of Guangdong Medical University, Zhanjiang, 524003, Guangdong Province, China.
Xingyu SongLaboratory of Urology, Affiliated Hospital of Guangdong Medical University, Zhanjiang, 524001, Guangdong Province, China.
Yuyang HuangLaboratory of Urology, Affiliated Hospital of Guangdong Medical University, Zhanjiang, 524001, Guangdong Province, China.
Ke ZouLaboratory of Urology, Affiliated Hospital of Guangdong Medical University, Zhanjiang, 524001, Guangdong Province, China.
Xuan DongLaboratory of Urology, Affiliated Hospital of Guangdong Medical University, Zhanjiang, 524001, Guangdong Province, China.
Hongwei LiuLaboratory of Urology, Affiliated Hospital of Guangdong Medical University, Zhanjiang, 524001, Guangdong Province, China. lhwhongwei@gdmu.edu.cn.

Funding

Guangdong Basic and Applied Basic Research Foundation 2022A1515012195Guangdong Medical University Undergraduate Innovation and Entrepreneurship Training Program GDMU2023355High-level talents scientific research start-up funds of the Affliated Hospital of Guangdong Medical University 2020123465Medical Scientific Research Foundation of Guangdong Province A2023290The Clinical and Basic Science Innovation Special Program of Guangdong Medical University GDMULCJC2024054Zhanjiang Science and Technology Plan Project 2021A05091
6 · The paper itself

Abstract

Bladder cancer (BLCA) is a prevalent urological malignancy that exhibits a high degree of tumor heterogeneity and morbidity. Tumor angiogenesis, a vital hallmark of cancer, greatly influences the tumor microenvironment (TME). The emergence of anti-angiogenic drugs has provided a new turning point in cancer treatment. An integrated machine learning system was constructed to build the angiogenesis-related gene signatures (ARGS). ARGS was used to assess TME status in BLCA. Pharmacophore construction was employed to construct pharmacophore features of highly cytotoxic drug payload combinations for antibody-drug conjugates (ADCs). In addition, we developed a natural compound using artificial intelligence-driven drug design technology. This compound exhibits anti-angiogenic effects in BLCA and serves as a highly cytotoxic drug payload for ADCs. Multi-dimensional machine learning was used to screen biomarkers for evaluating the post-treatment effects of drug therapy in BLCA. The ARGS consists of 12 angiogenesis-related genes associated with prognostic risk in BLCA. The ARGS divides BLCA patients into high-risk and low-risk groups. Significant TME remodeling was identified in the high-risk BLCA cohort and demonstrated a strong association with tumor angiogenesis. Expression levels of key immune checkpoint markers significantly differed between BLCA risk groups. Saikosaponin D (SSD) shows promising potential as a novel ADC drug for anti-angiogenic treatment in BLCA. Multi-dimensional machine learning results indicate that MYH11 is the most likely biomarker for evaluating the post-treatment effects of SSD therapy. SSD may potentially treat tumors by regulating angiogenesis in BLCA. The detection of MYH11 can be used to assess the therapeutic effectiveness of SSD in BLCA.

Indexed as

Biomarkers, TumorDeep LearningMachine LearningNeovascularization, PathologicUrinary Bladder NeoplasmsAngiogenesisAngiogenesis InhibitorsFemaleGene Expression Regulation, NeoplasticHumansMalePrognosisTumor MicroenvironmentAngiogenesis InhibitorsBiomarkers, TumorAntibody-drug conjugatesArtificial intelligence-driven drug designBladder cancerMachine learningPharmacophoreProtein homology modelingSaikosaponin D

Identifiers

PMID40665008
PMCPMC12263826

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.