Evidence map›Paper›PMID 40664703›Full record

ArticleNature communications2025

Structural stabilization of the intrinsically disordered SARS-CoV-2 N by binding to RNA sequences engineered from the viral genome fragment.

Sara Landeras-Bueno, Chitra Hariharan, Ruben Diaz Avalos, Andrew S Norris, Dalton T Snyder, Kathryn M Hastie, Stephanie Harkins, Michelle Zandonatti, Roshan R Rajamanickam, Eduardo Olmedillas and 4 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Evolution of a fuzzy ribonucleoprotein complex in viral assembly.bioRxiv : the preprint server for biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Sara Landeras-BuenoLa Jolla Institute for Immunology, La Jolla, CA, USA. sara.landeras@uchceu.es.ORCID http://orcid.org/0000-0003-2143-2569
Chitra HariharanLa Jolla Institute for Immunology, La Jolla, CA, USA.
Ruben Diaz AvalosLa Jolla Institute for Immunology, La Jolla, CA, USA.
Andrew S Norris *Department of Chemistry and Biochemistry, The Ohio State University, Columbus, OH, USA.
Dalton T Snyder *Department of Chemistry and Biochemistry, The Ohio State University, Columbus, OH, USA.ORCID http://orcid.org/0000-0003-2154-5002
Kathryn M HastieLa Jolla Institute for Immunology, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-3406-1210
Stephanie HarkinsLa Jolla Institute for Immunology, La Jolla, CA, USA.
Michelle ZandonattiLa Jolla Institute for Immunology, La Jolla, CA, USA.
Roshan R RajamanickamLa Jolla Institute for Immunology, La Jolla, CA, USA.
Eduardo OlmedillasLa Jolla Institute for Immunology, La Jolla, CA, USA.
Robyn MillerLa Jolla Institute for Immunology, La Jolla, CA, USA.
Sujan ShrestaLa Jolla Institute for Immunology, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-2906-8474
Vicki H WysockiDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, OH, USA.ORCID http://orcid.org/0000-0003-0495-2538
Erica Ollmann SaphireLa Jolla Institute for Immunology, La Jolla, CA, USA. erica@lji.org.ORCID http://orcid.org/0000-0002-1206-7451

Funding

Structure of the SARS-CoV-2 Nucleocapsid: building block to viral capsidR21AI178427 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI SAPHIRE, ERICA OLLMANN · 2023 to 2024
$516k
NIAID NIH HHS R21 AI178427
6 · The paper itself

Abstract

The nucleocapsid N is one of four structural proteins of the coronaviruses. Its essential role in genome encapsidation makes it a critical therapeutic target for COVID-19 and related diseases. However, the inherent disorder of full-length N hampers its structural analysis. Here, we describe a stepwise method using viral-derived RNAs to stabilize SARS-CoV-2 N for EM analysis. We identify pieces of RNA from the SARS-CoV-2 genome that promote the formation of structurally homogeneous N dimers, intermediates of assembly, and filamentous capsid-like structures. Building on these results, we engineer a symmetric RNA to stabilize N protein dimers, the building block of high-order assemblies, for EM studies. We combine domain-specific monoclonal antibodies against N with chemical cross-linking mass spectrometry to validate the spatial arrangement of the N domains within the dimer. Additionally, our cryo-EM analysis reveals novel antigenic sites on the N protein. Our findings provide insights into N protein´s architectural and antigenic principles, which can guide design of pan-coronavirus therapeutics.

Indexed as

Coronavirus Nucleocapsid ProteinsGenome, ViralIntrinsically Disordered ProteinsRNA, ViralSARS-CoV-2Antibodies, MonoclonalCOVID-19Cryoelectron MicroscopyHumansModels, MolecularPhosphoproteinsProtein BindingProtein DomainsProtein MultimerizationAntibodies, MonoclonalCoronavirus Nucleocapsid ProteinsIntrinsically Disordered Proteinsnucleocapsid phosphoprotein, SARS-CoV-2PhosphoproteinsRNA, Viral

Identifiers

PMID40664703
PMCPMC12264264

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.