Evidence map›Paper›PMID 40664669›Full record

ArticleNature communications2025

Variable lymphocyte receptor F is generated via somatic diversification and expressed by lamprey T-like cells.

Sabyasachi Das, Francisco Fontenla-Iglesias, Masayuki Hirano, Ryo Morimoto, Byron B Au-Yeung, Yashuo Wang, Weiming Li, Thomas Boehm, Jonathan P Rast, Max D Cooper

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Sabyasachi Das *Department of Pathology and Laboratory Medicine, Emory University, Atlanta, GA, USA. sdas8@emory.edu.ORCID http://orcid.org/0000-0002-9116-9623
Francisco Fontenla-Iglesias *Department of Pathology and Laboratory Medicine, Emory University, Atlanta, GA, USA.ORCID http://orcid.org/0000-0002-5760-5102
Masayuki HiranoDepartment of Pathology and Laboratory Medicine, Emory University, Atlanta, GA, USA.ORCID http://orcid.org/0000-0002-2455-9189
Ryo MorimotoDepartment of Developmental Immunology, Max-Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany.ORCID http://orcid.org/0000-0002-5497-4666
Byron B Au-YeungEmory University School of Medicine, Department of Medicine, Division of Immunology, Lowance Center for Human Immunology, Atlanta, GA, USA.ORCID http://orcid.org/0000-0002-6446-9102
Yashuo WangDepartment of Pathology and Laboratory Medicine, Emory University, Atlanta, GA, USA.
Weiming LiDepartment of Fisheries and Wildlife, Michigan State University, East Lansing, MI, USA.ORCID http://orcid.org/0000-0001-5437-1518
Thomas BoehmDepartment of Developmental Immunology, Max-Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany.ORCID http://orcid.org/0000-0001-5172-7478
Jonathan P RastDepartment of Pathology and Laboratory Medicine, Emory University, Atlanta, GA, USA. jprast@emory.edu.ORCID http://orcid.org/0000-0001-6494-0403
Max D CooperDepartment of Pathology and Laboratory Medicine, Emory University, Atlanta, GA, USA. mdcoope@emory.edu.ORCID http://orcid.org/0000-0003-0887-8785

Funding

Yerkes National Primate Research Center Role of type-I IFN in regulating COVID-19 induced inflammation and pathogenesisP51OD011132 · OD · EMORY UNIVERSITY · PI Joon Sup Lee · 2012 to 2026
$167.0M
Characterization of the Lamprey Adaptive Immune SystemR01AI072435 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Max Dale Cooper · 2007 to 2026
$8.1M
T Cell Differentiation and Diversification in Jawless Vertebrates: Administrative Supplement for purchase of Laser Capture MicroscopeR35GM122591 · NIGMS · EMORY UNIVERSITY · PI Max Dale Cooper · 2017 to 2026
$4.7M
Characterization of an Alternative Adaptive Immune System in HagfishR01GM108838 · NIGMS · EMORY UNIVERSITY · PI COOPER, MAX DALE · 2014 to 2016
$889k
NIAID NIH HHS R01 AI072435NIGMS NIH HHS R01 GM108838NIGMS NIH HHS R35 GM122591NIH HHS P51 OD011132U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R01AI072435U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R35GM122591
6 · The paper itself

Abstract

All extant jawless vertebrates (lampreys and hagfishes) possess a unique adaptive immune system characterized by highly variable lymphocyte receptors (VLR) that are assembled in developing lymphocytes using leucine-rich-repeat donor cassettes. Five VLR types have been identified in lampreys: VLRA, VLRB, VLRC, VLRD, and VLRE. VLRB-expressing lymphocytes are functional analogs to B cells, whereas VLRA, VLRC, VLRD, and VLRE-expressing lymphocytes are more akin to T cells of jawed vertebrates. Here we define an additional VLR, designated VLRF. VLRF is phylogenetically closest to VLRA, with which it likely shares a common ancestral gene of at least 250 million years in the past. VLR assembly analyses show that VLRA, VLRC, VLRD, VLRE, and VLRF share donor cassettes through long-range intra- and inter-chromosomal interactions, whereas VLRB utilizes a distinct, dedicated cassette set. The pattern of gene expression, donor cassette usage, and distinctive amino acid composition in the C-terminal stalk suggest that VLRF⁺ lymphocytes may represent an additional T-like sub-lineage, adding further complexity to the VLR-based adaptive immune system.

Indexed as

Fish ProteinsLampreysT-LymphocytesAnimalsEvolution, MolecularPhylogenyReceptors, AntigenFish ProteinsReceptors, Antigen

Identifiers

PMID40664669
PMCPMC12264053

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.