Evidence map›Paper›PMID 40662343›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2025

Toward an integrated resource for pharmacogenomics (PGx): Survey findings from the genomic medicine communities.

Clarissa J Klein, Li Gong, Kelly E Caudle, Hetanshi Naik, Philip E Empey, James M Hoffman, Steve Scherer, Otito F Iwuchukwu, David Gregornik, Andrew A Monte and 4 more

Abstract read
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Clarissa J KleinDepartment of Biomedical Data Science, Stanford University, Stanford, CA.
Li GongDepartment of Biomedical Data Science, Stanford University, Stanford, CA.
Kelly E CaudleDepartment of Pharmacy and Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, TN.
Hetanshi NaikDepartment of Genetics, Stanford University, Stanford, CA.
Philip E EmpeyDepartment of Pharmacy and Therapeutics, University of Pittsburgh School of Pharmacy, Pittsburgh, PA.
James M HoffmanDepartment of Pharmacy and Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, TN.
Steve SchererDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX.
Otito F IwuchukwuDepartment of Pharmaceutical Sciences, School of Pharmacy and Health Sciences, Fairleigh Dickinson University, NJ.
David GregornikChildren's Minnesota, Minneapolis/St Paul, MN.
Andrew A MonteRocky Mountain Poison and Drug Safety, Denver Health and Hospital Authority, Denver, CO and Colorado Center for Personalized Medicine, University of Colorado School of Medicine, Aurora, CO.
Jesse J SwenDepartment of Clinical Pharmacy and Toxicology, Leiden University Medical Center, Leiden, The Netherlands.
Stuart A ScottDepartment of Pathology, Stanford University, Stanford, CA.
Michelle Whirl-CarrilloDepartment of Biomedical Data Science, Stanford University, Stanford, CA.
Teri E KleinDepartments of Biomedical Data Science, Medicine (BMIR) and Genetics, Stanford University, Stanford, CA. Electronic address: teri.klein@stanford.edu.

Funding

Baylor College of Medicine/Stanford University Clinical Genome Resource (CLINGEN)U24HG009649 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI TERI Ellen KLEIN, Aleksandar Milosavljevic · 2021 to 2026
$31.5M
PharmGKB: pharmacogenomics discovery and implementationU24HG010615 · NHGRI · STANFORD UNIVERSITY · PI TERI Ellen KLEIN, Michelle Whirl-Carrillo · 2020 to 2026
$9.5M
Clinical Implementation Resources for Pharmacogenomics (CIRP)U24HG013077 · NHGRI · STANFORD UNIVERSITY · PI CAUDLE, KELLY E., KLEIN, TERI ELLEN · 2023 to 2025
$4.4M
NHGRI NIH HHS U24 HG009649NHGRI NIH HHS U24 HG010615NHGRI NIH HHS U24 HG013077
6 · The paper itself

Abstract

purposePharmacogenomics (PGx) is a critical component of precision health care that aims to improve drug efficacy and reduce adverse events. Terminologies and standards have not always aligned between PGx and broader genomic medicine communities, which is a barrier to PGx implementation. An updated assessment of community barriers, needs, and perspectives is critical to enable more standardized terminologies and interpretation frameworks.

methodsThe Clinical Genome Resource's PGx Interpretation Committee (PGxIC, formerly referred to as the PGx Working Group, PGxWG) conducted 2 surveys targeting the PGx and genomic medicine communities (n = 508) to evaluate perspectives on PGx clinical validity and actionability frameworks, as well as other barriers to PGx implementation. Surveys were tailored toward self-reported familiarity with PGx. Data primarily consisted of free text, which were analyzed using qualitative content analysis methods.

resultsSurvey responses indicated conflation of terminology across disciplines, including confusion around differing definitions of terms in PGx and non-PGx contexts. Data also indicated broad support for leveraging existing PGx guidelines and framework structures alongside the standardization of approaches and centralization of resources.

conclusionThese novel survey results demonstrate broad consensus on the importance of integrating PGx into clinical practice, including support for development of gene-drug response clinical validity and actionability frameworks aligned with Clinical Genome Resource's frameworks for gene-disease relationships.

Indexed as

Genomic MedicinePharmacogeneticsGenomicsHumansPrecision MedicineSurveys and QuestionnairesClinGenClinPGxPGxPharmacogenomicsPrecision medicine

Identifiers

PMID40662343
PMCPMC12375431

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.