ArticleBioinformatics advances2025
K2R: Tinted de Bruijn graphs implementation for efficient read extraction from sequencing datasets.
Article in Bioinformatics advances, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
3 citing papers in PubMed.
- Kaminari: a frugal colored index for approximateBioinformatics advances · 2026Article
- OReO: optimizing read order for practical compression.Bioinformatics advances · 2025Article
- When less is more: sketching with minimizers in genomics.Genome biology · 2024Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Summary: Biological sequence analysis often relies on reference genomes, but producing accurate assemblies remains a challenge. As a result, de novo analysis directly from raw reads, without preprocessing, is frequently more practical. A common task across many applications is to identify reads containing a given Availability and implementation: Developed in C++, K2R is open source and available at http://github.com/LeaVandamme/K2R.
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.