Evidence map›Paper›PMID 40661456›Full record

ArticlebioRxiv : the preprint server for biology2025

Backbone Rigidity Encodes Universal Viscoelastic Signatures in Biomolecular Condensates.

Sean Yang, Subhadip Biswas, Davit A Potoyan

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Sean YangDepartment of Chemistry, Iowa State University, Ames IA 50011, USA.
Subhadip BiswasDepartment of Chemistry, Iowa State University, Ames IA 50011, USA.
Davit A PotoyanDepartment of Chemistry, Iowa State University, Ames IA 50011, USA.ORCID 0000-0002-5860-1699

Funding

Multi-scale computational investigation of functions and mechanisms of protein-RNA phase separation.R35GM138243 · NIGMS · IOWA STATE UNIVERSITY · PI Davit POTOYAN · 2020 to 2026
$2.4M
NIGMS NIH HHS R35 GM138243
6 · The paper itself

Abstract

Biomolecular condensates exhibit a wide range of viscoelastic properties shaped by their molecular sequence and composition. Coarse-grained molecular models of intrinsically disordered proteins are widely used to complement experiments by revealing the structure and thermodynamics of condensates. However, fully flexible chain representations of inherently disordered proteins often fail to capture their complex viscoelastic behavior, instead predicting purely viscous responses. In this work, we demonstrate that introducing sequence-dependent chain rigidity enables the accurate reproduction of the elastic and viscous moduli for experimentally characterized condensates of A1-LCD and its numerous mutants. Furthermore, we show that the frequency-dependent loss factor can be described by a single parameter that universally correlates with viscosity across different sequences and variations of the coarse-grained molecular energy function. Our results also reveal that increased chain rigidity, indicated by a larger gyration radius, expands the condensates' elastic regime. Finally, we elucidate the microscopic origins of sequence-encoded viscoelasticity by showing how it can be tuned through sequence rearrangements that promote sticker cluster formation.

Identifiers

PMID40661456
PMCPMC12259139

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.