ArticlebioRxiv : the preprint server for biology2025
A connectomic resource for neural cataloguing and circuit dissection of the larval zebrafish brain.
Abstract readPreprint
In one paragraph
Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
0 citing papers in PubMed.
No citing paper in PubMed yet.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
70 authors.
Mariela D PetkovaDepartment of Molecular and Cellular Biology, Center for Brain Science, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0001-9815-7871
Michał JanuszewskiGoogle Research, Zürich 8002, Switzerland.ORCID 0000-0002-3480-2744
Tim BlakelyGoogle Research, Boulder, CO 80301, USA.ORCID 0000-0003-0995-5471
Kristian J HerreraDepartment of Molecular and Cellular Biology, Center for Brain Science, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0002-5370-8366
Gregor F P SchuhknechtDepartment of Molecular and Cellular Biology, Center for Brain Science, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0001-5797-2386
Robert TillerDepartment of Molecular and Cellular Biology, Center for Brain Science, Harvard University, Cambridge, MA 02138, USA.ORCID 0009-0006-4830-9527
Jinhan ChoiDepartment of Molecular and Cellular Biology, Center for Brain Science, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0002-5690-5963
Richard L SchalekDepartment of Molecular and Cellular Biology, Center for Brain Science, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0003-2450-1718
Jonathan Boulanger-WeillDepartment of Molecular and Cellular Biology, Center for Brain Science, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0002-1580-0778
Adi PelegDepartment of Molecular and Cellular Biology, Center for Brain Science, Harvard University, Cambridge, MA 02138, USA.
Yuelong WuDepartment of Molecular and Cellular Biology, Center for Brain Science, Harvard University, Cambridge, MA 02138, USA.
Shuohong WangDepartment of Molecular and Cellular Biology, Center for Brain Science, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0001-5186-4157
Jakob TroidlSchool of Engineering and Applied Sciences, Harvard University, Cambridge, MA 02138, USA.ORCID 0009-0006-7958-867X
Sumit Kumar VohraDepartment of Visual and Data-Centric Computing, Zuse Institute Berlin (ZIB), Berlin, Germany.ORCID 0000-0003-2443-7461
Donglai WeiSchool of Engineering and Applied Sciences, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0002-2329-5484
Zudi LinSchool of Engineering and Applied Sciences, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0003-4176-8035
Armin BahlDepartment of Molecular and Cellular Biology, Center for Brain Science, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0001-7591-5860
Juan Carlos TapiaDepartment of Molecular and Cellular Biology, Center for Brain Science, Harvard University, Cambridge, MA 02138, USA.
Nirmala IyerJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.ORCID 0000-0003-0202-4746
Zachary T MillerHarvard College, Harvard University, Cambridge, MA 02138, USA.
Kathryn B HebertHarvard College, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0002-3709-0535
Elisa C PavarinoDepartment of Molecular and Cellular Biology, Center for Brain Science, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0001-5795-0646
Milo TaylorHarvard College, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0002-2167-3904
Zixuan DengHarvard Graduate School of Design, Harvard University, Cambridge, MA 02138, USA.
Moritz StinglDepartment of Molecular and Cellular Biology, Center for Brain Science, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0001-5483-026X
Dana HocklingDepartment of Molecular and Cellular Biology, Center for Brain Science, Harvard University, Cambridge, MA 02138, USA.
Alina HeblingDepartment of Molecular and Cellular Biology, Center for Brain Science, Harvard University, Cambridge, MA 02138, USA.ORCID 0009-0008-6247-9121
Ruohong C WangDepartment of Molecular and Cellular Biology, Center for Brain Science, Harvard University, Cambridge, MA 02138, USA.
Lauren L ZhangHarvard College, Harvard University, Cambridge, MA 02138, USA.
Sam DvorakHarvard College, Harvard University, Cambridge, MA 02138, USA.
Zainab FaikDepartment of Molecular and Cellular Biology, Center for Brain Science, Harvard University, Cambridge, MA 02138, USA.
Kareem I KingHarvard College, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0002-7025-4618
Pallavi GoelBrandeis University, Waltham, MA 02454, USA.
Julian Wagner-CarenaHarvard College, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0002-4039-5647
David AleyHarvard College, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0002-1993-612X
Selimzhan ChalyshkanHarvard College, Harvard University, Cambridge, MA 02138, USA.
Dominick ContreasHarvard College, Harvard University, Cambridge, MA 02138, USA.
Xiong LiHarvard College, Harvard University, Cambridge, MA 02138, USA.
Akila V MuthukumarHarvard College, Harvard University, Cambridge, MA 02138, USA.ORCID 0009-0006-6257-719X
Marina S VernagliaHarvard College, Harvard University, Cambridge, MA 02138, USA.
Teodoro Tapia CarrascoUniversity of Massachusetts Dartmouth, Dartmouth, MA 02747, USA.
Sofia MelnychuckHarvard College, Harvard University, Cambridge, MA 02138, USA.ORCID 0009-0005-5126-0093
TingTing YanHarvard College, Harvard University, Cambridge, MA 02138, USA.ORCID 0009-0003-3828-2007
Ananya DalalBrandeis University, Waltham, MA 02454, USA.
James M DiMartinoBrandeis University, Waltham, MA 02454, USA.ORCID 0009-0000-7503-035X
Sam BrownBrandeis University, Waltham, MA 02454, USA.
Nana Safo-MensaHarvard College, Harvard University, Cambridge, MA 02138, USA.
Ethan GreenbergBrandeis University, Waltham, MA 02454, USA.
Michael CookJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.ORCID 0000-0002-7892-6845
Samantha Finley-MayJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.ORCID 0000-0002-8086-206X
Miriam A FlynnJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.ORCID 0000-0002-3314-4823
Gary Patrick HopkinsJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.ORCID 0000-0002-6918-1589
Julie KovalyakJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.ORCID 0000-0001-7864-7734
Meghan LeonardJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.ORCID 0009-0005-4678-8213
Alanna LohffJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.ORCID 0000-0002-1242-1836
Christopher OrdishJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.ORCID 0000-0001-8439-9714
Ashley L ScottJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.ORCID 0000-0002-1835-5016
Satoko TakemuraJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.ORCID 0000-0002-2863-0050
Claire WalshJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.ORCID 0000-0002-6774-7307
John J WalshJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.ORCID 0000-0002-7176-4708
Daniel R BergerDepartment of Molecular and Cellular Biology, Center for Brain Science, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0002-9677-6932
Hanspeter PfisterSchool of Engineering and Applied Sciences, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0002-3620-2582
Stuart BergJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.ORCID 0000-0002-0766-0488
Christopher KnechtJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.ORCID 0000-0002-5663-5967
Geoffrey W MeissnerJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.ORCID 0000-0002-9230-2772
Wyatt KorffJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.ORCID 0000-0001-8396-1533
Misha B AhrensJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.ORCID 0000-0002-3457-4462
Viren JainGoogle Research, Mountain View, CA 94043, USA.ORCID 0000-0003-1488-3505
Jeff W LichtmanDepartment of Molecular and Cellular Biology, Center for Brain Science, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0002-0208-3212
Florian EngertDepartment of Molecular and Cellular Biology, Center for Brain Science, Harvard University, Cambridge, MA 02138, USA.ORCID 0000-0001-8169-2990
Funding
Zooming into the fish's brain-What is really going on! Connectomics analysis of larval zebrafish.U19NS104653 · NINDS · HARVARD UNIVERSITY · PI Florian Engert · 2017 to 2026
$39.4MBRAIN CONNECTS: A Center for High-throughput Integrative Mouse ConnectomicsUM1NS132250 · NINDS · HARVARD UNIVERSITY · PI Jeff W Lichtman · 2023 to 2026
$24.9MA Facility to Generate Connectomics InformationU24NS109102 · NINDS · HARVARD UNIVERSITY · PI LICHTMAN, JEFF W · 2018 to 2023
$6.5MBRAIN CONNECTS: Rapid and Cost‐effective Connectomics with Intelligent Image Acquisition, Reconstruction, and QueryingU01NS132158 · NINDS · HARVARD UNIVERSITY · PI LICHTMAN, JEFF W, PFISTER, HANSPETER · 2023 to 2025
$4.3MEnhancing Assisted Reproductive Technologies with Deep Learning and Data VisualizationR01HD104969 · NICHD · HARVARD UNIVERSITY · PI BEN YOSEF, DALIT, NEEDLEMAN, DANIEL · 2021 to 2025
$3.4MGenetic and neural mechanisms underlying emerging social behavior in zebrafishR01NS124017 · NINDS · HARVARD UNIVERSITY · PI ENGERT, FLORIAN, FISHMAN, MARK C · 2024 to 2025
$1.5MNICHD NIH HHS R01 HD104969NINDS NIH HHS R01 NS124017NINDS NIH HHS U01 NS132158NINDS NIH HHS U19 NS104653NINDS NIH HHS U24 NS109102NINDS NIH HHS UM1 NS132250
Abstract
We present a correlated light and electron microscopy (CLEM) dataset from a 7-day-old larval zebrafish, integrating confocal imaging of genetically labeled excitatory (
Identifiers
What OpenQuestion holds
Textmetadata
LicenceCC BY-NC
Read underepoch 390
Registered trials
None linked
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.