Evidence map›Paper›PMID 40660414›Full record

ArticleEnvironmental microbiome2025

Reconsidering the ecological effect of seed endophytes in building plant microbial environments: lessons from a Chinese medicinal plant Panax notoginseng.

Yun Wen, Wei-Xi Yang, Yi-Qian Li, Chun-Xi Lu, Hong-Yan Hu, Li-Rong Guo, Shuang-Ye Huang, Xiao-Xia Pan, Shu-Sheng Zhu, Ming-Zhi Yang

Abstract read
In one paragraph

Article in Environmental microbiome, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yun Wen *School of Ecology and Environmental Sciences, Yunnan University, Kunming, 650504, China.
Wei-Xi Yang *School of Food and Health, Beijing Technology and Business University, Beijing, 100048, China.
Yi-Qian LiSchool of Ecology and Environmental Sciences, Yunnan University, Kunming, 650504, China.
Chun-Xi LuSchool of Ecology and Environmental Sciences, Yunnan University, Kunming, 650504, China.
Hong-Yan HuSchool of Ecology and Environmental Sciences, Yunnan University, Kunming, 650504, China.
Li-Rong GuoSchool of Ecology and Environmental Sciences, Yunnan University, Kunming, 650504, China.
Shuang-Ye HuangSchool of Ecology and Environmental Sciences, Yunnan University, Kunming, 650504, China.
Xiao-Xia PanSchool of Chemistry and Environment, Yunnan MinZu University, Kunming, China.
Shu-Sheng ZhuCollege of Plant Protection, Yunnan Agricultural University, Kunming, 650201, China. sszhu@ynau.edu.cn.
Ming-Zhi YangSchool of Ecology and Environmental Sciences, Yunnan University, Kunming, 650504, China. yangmzh@ynu.edu.cn.

Funding

National Natural Science Foundation of China 32360255, 32471746; 31560538the joint foundation of the Yunnan Provincial Department of Science and Technology and Yunnan University 2019FY003024Yunnan provincial key S&T special project 202102AE090042
6 · The paper itself

Abstract

backgroundSeed endophytes (SEs) are of particular interest in the fields of plant science, microbiology and agronomy due to their unique spatial and functional relationship with the host plant. SEs formed originally in mother plants, represent the majority of vertically transmitted endophytes (VTEs) in plants, and the inheritance of SEs by plants is a strategy to cope with environmental challenges. However, despite the growing interest in seed endophytes (SEs), our understanding of the host effects of SEs and their transmission remains limited. Here, seeds of a Chinese medicinal plant, pseudoginseng (Pg), were germinated and cultivated separately in autoclaved and natural guest soils under aseptic conditions, and the vertically transferred SEs (sVTEs) in the progeny plant endophytic and rhizospheric soil microbiomes were examined using an amplicon-based approach.

resultsWe first categorized the detected Pg SE amplicon sequence variants (ASVs) into sVTEs and other SEs (nVTEs) based on the ASV overlap analyses, and an apparent taxa bias in sVTE was observed for both bacteria and fungi. Bacterial sVTEs are characteristically motile, biofilm forming and stress tolerant. The presence of soil-dwelling microbes did not prevent progeny plants from inheriting levels of sVTEs from seeds, but involved in shaping the composition of the acquired sVTEs. Most importantly, an aseptic cultivation experiment showed that the SEs alone were able to establish a high diversity of plant-associated microbiota (PAM) in progeny plants via vertical transmission; and sVTEs were acted as a core microbiota that dominated the assembly of the progeny PAM (with the relative abundances ranged from 21 to 79%) in both the natural and sterilized soil cultivation experiments. However, the impact of sVTEs on PAM assembly may be more significant than is currently recognized, given that proportions of SEs and sVTEs in plant seeds remain undetected due to technological limitations and small sample sizes.

conclusionsThe work has advanced our knowledge of the nature of sVTEs and the ecological effects of SEs on host plants.

Indexed as

Ecological effect‘Market’ of sVTEPlant-associated microbiota (PAM)PseudoginsengSeed endophytesVertically transferred seed endophytes (sVTEs)

Identifiers

PMID40660414
PMCPMC12261585

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.