Evidence map›Paper›PMID 40660379›Full record

ArticleBiology of sex differences2025

Transcriptome analysis reveals the sex-switching mechanism of juvenile hermaphroditism in silver pomfret (Pampus argenteus).

Yaya Li, Jiabao Hu, Chongyang Wang, Man Zhang, Youyi Zhang, Yuanbo Li, Mengke Tang, Chunlai Qin, Zukang Feng, Shanliang Xu and 4 more

Abstract read
In one paragraph

Article in Biology of sex differences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Yaya Li *College of Marine Sciences, Ningbo University, Ningbo, China.
Jiabao Hu *College of Marine Sciences, Ningbo University, Ningbo, China. hujiabao@nbu.edu.cn.
Chongyang WangCollege of Marine Sciences, Ningbo University, Ningbo, China.
Man ZhangCollege of Marine Sciences, Ningbo University, Ningbo, China.
Youyi ZhangCollege of Marine Sciences, Ningbo University, Ningbo, China.
Yuanbo LiCollege of Marine Sciences, Ningbo University, Ningbo, China.
Mengke TangCollege of Marine Sciences, Ningbo University, Ningbo, China.
Chunlai QinCollege of Marine Sciences, Ningbo University, Ningbo, China.
Zukang FengCollege of Marine Sciences, Ningbo University, Ningbo, China.
Shanliang XuCollege of Marine Sciences, Ningbo University, Ningbo, China.
Xiaojun YanCollege of Marine Sciences, Ningbo University, Ningbo, China.
Xubo WangCollege of Marine Sciences, Ningbo University, Ningbo, China.
Haimin ChenCollege of Marine Sciences, Ningbo University, Ningbo, China. chenhaimin@nbu.edu.cn.
Yajun WangCollege of Marine Sciences, Ningbo University, Ningbo, China. wangyajun@nbu.edu.cn.

Funding

China Postdoctoral Science Foundation 2022 M721729NIEHS NIH HHS 27306C2006"Pioneer" and "Leading Goose" R&D Program of Zhejiang 2024C02006Public Welfare Program of Ningbo City 2022S204the National Key Research and Development Program of China 2022YFD2400103the Natural Science Foundation of China 1872195, 42076118 and 42306114the Ningbo 2025 Major Project of Science Technology and Innovation 2021Z003the Ningbo Public Welfare Science and Technology Project 2021S061the Ningbo Yongjiang Talent Introduction Programme 2021B-029-Cthe Research on breeding technology of candidate species for Guangdong modern marine ranching 2024-MRB-00-001
6 · The paper itself

Abstract

backgroundOur previous study on silver pomfret (Pampus argenteus) demonstrated that all gonads initially develop into ovaries by 60 days post-hatch (dph). Between 80 and 120 dph, some oocytes undergo apoptosis, resulting in the development of testes and a transient hermaphroditic stage. This observation indicates a complex molecular mechanism underlying sex differentiation in this species.

methodsGonadal samples were collected at 90 dph, 120 dph, and 150 dph, with sex identification performed by HE staining and transcriptome sequencing. Morphological traits, including body length and weight, were measured to evaluate sexual size dimorphism. Candidate genes related to with sex differentiation were identified through differential gene expression analysis and feature selection methods, followed by gene set enrichment analysis to identify potential molecular pathways. Heatmaps were generated to visualize gene expression patterns across developmental stages and samples. Sex hormones concentrations were measured using commercial assay kits to assess their role in gonadal differentiation. RT-qPCR validated the sequencing results, while immunofluorescence (IF) examined the expression of related genes in testes and ovaries.

resultsHistological and transcriptomic analyses identified the period between 90 and 120 dph as critical for sex differentiation in silver pomfret. At 90 dph, apoptotic signals trigger the apoptosis of early-stage oocytes. During this period, both testis-preferential and ovary-preferential genes exhibit high expression, leading to spermatogonia differentiation and the emergence of a juvenile hermaphroditic stage. The study established that androgens 11-KT and estrogen E2 regulate sex differentiation through modulation of related gene expression, with 11-KT serving a crucial role. This process involved significant enrichment of the steroid hormone biosynthesis pathway and the metabolism of xenobiotics by cytochrome P450 in the testes. Ovarian development is characterized by fatty acid metabolism and PPAR signaling pathway activation, along with energy metabolism pathways including the citrate cycle (TCA cycle) and cell degradation processes, such as lysosome activity and ubiquitin-mediated proteolysis, suggesting that ovarian development encompasses lipid accumulation and follicular selection.

conclusionsThis investigation illuminates the molecular processes underlying this distinctive pattern of gonadal differentiation, providing novel insights into sex differentiation in fish exhibiting a juvenile hermaphroditic stage.

Indexed as

Hermaphroditic OrganismsPerciformesSex Determination ProcessesSex DifferentiationTranscriptomeAnimalsFemaleGene Expression ProfilingMaleOvaryTestisApoptosisJuvenile hermaphroditismPampus argenteusSex differentiationSex hormone

Identifiers

PMID40660379
PMCPMC12261592

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.