Evidence map›Paper›PMID 40659665›Full record

ArticleScientific reports2025

Integrated bioinformatics and machine learning reveal key genes and immune mechanisms associated with uremia.

Zhiyue Sun, Zhiqiang Ding, Xiaoyang Guo, Jiangtao Li, Daoyuan Ding, Bo Wen

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Zhiyue SunShenzhen Clinical College of Integrated Chinese and Western Medicine, Guangzhou University of Chinese Medicine, Shenzhen, 518104, Guang Dong, China.
Zhiqiang DingShenzhen Clinical College of Integrated Chinese and Western Medicine, Guangzhou University of Chinese Medicine, Shenzhen, 518104, Guang Dong, China.
Xiaoyang GuoShenzhen Clinical College of Integrated Chinese and Western Medicine, Guangzhou University of Chinese Medicine, Shenzhen, 518104, Guang Dong, China.
Jiangtao LiShenzhen Hospital of Integrated Traditional Chinese and Western Medicine, Shenzhen, 518104, Guang Dong, China.
Daoyuan DingShenzhen Hospital of Integrated Traditional Chinese and Western Medicine, Shenzhen, 518104, Guang Dong, China.
Bo WenShenzhen Clinical College of Integrated Chinese and Western Medicine, Guangzhou University of Chinese Medicine, Shenzhen, 518104, Guang Dong, China. tjwb001@126.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Uremia is a serious complication of end-stage chronic kidney disease, closely associated with immune imbalance and chronic inflammation. However, its molecular mechanisms remain largely unclear. In this study, we analyzed transcriptomic data from the GSE37171 dataset to identify genes associated with uremia. Differential expression and WGCNA analyses were used to screen core genes, followed by machine learning (LASSO, Random Forest, SVM-RFE) to identify key feature genes. GSEA and immune infiltration analyses were conducted to explore functional pathways and immune relevance. ROC curves were used to evaluate the discriminatory power of the selected genes. Four feature genes-NAF1, SNORD4A, CGB3, and CD3E-were identified. These genes were enriched in pathways related to apoptosis, immune regulation, and oxidative stress. Their expression levels correlated with multiple immune cell types, and ROC analysis demonstrated good discriminatory performance between uremia and healthy samples. Our findings provide potential molecular candidates for further investigation into the immune-related mechanisms of uremia.

Indexed as

Computational BiologyMachine LearningUremiaDatabases, GeneticGene Expression ProfilingGene Regulatory NetworksHumansROC CurveTranscriptomeBioinformaticsFeature genes.Immune infiltrationMachine learningUremia

Identifiers

PMID40659665
PMCPMC12260052

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.