Evidence map›Paper›PMID 40658724›Full record

ArticlePLoS genetics2025

Semaphorin 3f and post-embryonic regulation of retinal progenitors.

Amira Kalifa, Carrie L Hehr, Katelyn L Shewchuk, Risa Mori-Kreiner, Shaelene Standing, Rami Halabi, Sarah McFarlane

Abstract read
In one paragraph

Article in PLoS genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Amira KalifaDepartment of Cell Biology and Anatomy, Hotchkiss Brain Institute, Alberta Children's Hospital Research Institute, University of Calgary, Calgary, Alberta, Canada.
Carrie L HehrDepartment of Cell Biology and Anatomy, Hotchkiss Brain Institute, Alberta Children's Hospital Research Institute, University of Calgary, Calgary, Alberta, Canada.
Katelyn L ShewchukDepartment of Cell Biology and Anatomy, Hotchkiss Brain Institute, Alberta Children's Hospital Research Institute, University of Calgary, Calgary, Alberta, Canada.ORCID https://orcid.org/0009-0006-3747-8624
Risa Mori-KreinerDepartment of Cell Biology and Anatomy, Hotchkiss Brain Institute, Alberta Children's Hospital Research Institute, University of Calgary, Calgary, Alberta, Canada.
Shaelene StandingDepartment of Cell Biology and Anatomy, Hotchkiss Brain Institute, Alberta Children's Hospital Research Institute, University of Calgary, Calgary, Alberta, Canada.
Rami HalabiDepartment of Cell Biology and Anatomy, Hotchkiss Brain Institute, Alberta Children's Hospital Research Institute, University of Calgary, Calgary, Alberta, Canada.ORCID https://orcid.org/0000-0003-3160-3552
Sarah McFarlaneDepartment of Cell Biology and Anatomy, Hotchkiss Brain Institute, Alberta Children's Hospital Research Institute, University of Calgary, Calgary, Alberta, Canada.ORCID https://orcid.org/0000-0001-9880-9980

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Neural progenitors produce specific cell types that form the circuits of the nervous system. Extrinsic signals regulate both progenitor proliferation and the production of specific neuron types. Where progenitors reside within a progenitor niche determines to which of these signals they are exposed, and thus likely has important consequences on the progeny they produce. Little is known, however, of the signals that govern progenitor location within the niche. Here we show that a member of the Class III family of secreted Semaphorins, Semaphorin3fa (Sema3fa), is required for the orderly arrangement of progenitors with a niche present in the periphery of the larval and adult retina of zebrafish, the ciliary marginal zone (CMZ). CMZ progenitors express mRNAs for various Sema3 receptors, including for nrp2a, nrp2b and plxna1. Loss of Sema3fa in a previously characterized CRISPR/Cas9-generated sema3fa mutant allele (sema3faca304) results in a reduced eye size in juvenile fish, implicating Sema3fa in the ongoing production of retinal cells by the CMZ. Larval progenitors show altered cell cycle parameters, and the spatial organization of functionally distinct progenitors is disrupted, as is the generation of retinal cell types in the appropriate proportions and numbers. Our data support a model whereby Sema3fa secreted by CMZ progenitors reduces adhesive interactions to allow for smooth progression of progenitors through the niche, ensuring progenitors receive the correct recipe of extrinsic signals to secure the proper generation of new retinal circuits.

Indexed as

Nerve Tissue ProteinsNeural Stem CellsRetinaSemaphorinsZebrafish ProteinsAnimalsCell DifferentiationCell ProliferationGene Expression Regulation, DevelopmentalLarvaNeurogenesisStem Cell NicheZebrafishNerve Tissue ProteinsSemaphorinsZebrafish Proteins

Identifiers

PMID40658724
PMCPMC12274001

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.