Evidence map›Paper›PMID 40654855›Full record

ArticlebioRxiv : the preprint server for biology2025

A Cluster of Acidic Residues in the Cytoplasmic Domain of SARS-CoV-2 Spike is Required for Virion-Incorporation and Infectivity.

Charlotte A Stoneham, Rajendra Singh, Amalia De Leon, Petra Tafelmeyer, Francisco Acosta, Angus Fuori, Michael Anderson, Peter W Ramirez, Hannah S Schwartzer-Sperber, Satish Pillai and 2 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Charlotte A StonehamVA San Diego Healthcare System, San Diego CA USA.ORCID 0000-0003-3729-6936
Rajendra SinghVA San Diego Healthcare System, San Diego CA USA.
Amalia De LeonVA San Diego Healthcare System, San Diego CA USA.
Petra TafelmeyerHybrigenics Corp., Boston MA USA.
Francisco AcostaDepartment of Biological Sciences, California State University Long Beach, Long Beach CA USA.
Angus FuoriDepartment of Biological Sciences, California State University Long Beach, Long Beach CA USA.
Michael AndersonDepartment of Biological Sciences, California State University Long Beach, Long Beach CA USA.
Peter W RamirezDepartment of Biological Sciences, California State University Long Beach, Long Beach CA USA.ORCID 0000-0003-2388-9140
Hannah S Schwartzer-SperberVitalant Institute. San Francisco, CA USA.
Satish PillaiVitalant Institute. San Francisco, CA USA.
Mary K Lew-InskiVA San Diego Healthcare System, San Diego CA USA.
John GuatelliVA San Diego Healthcare System, San Diego CA USA.

Funding

Targeting druggable coronavirus proteinsU19AI171443 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI Juan C. de la Torre · 2022 to 2026
$101.4M
Determining the role of AnnexinA2 in HIV-1 and SARS-CoV-2 assemblyR16AI184450 · NIAID · CALIFORNIA STATE UNIVERSITY LONG BEACH · PI PETER William RAMIREZ · 2024 to 2026
$557k
NIAID NIH HHS R16 AI184450NIAID NIH HHS U19 AI171443
6 · The paper itself

Abstract

Like all coronaviruses, the infectivity of SARS-CoV-2 virus particles (virions) requires incorporation of the Spike glycoprotein. Yet, the mechanisms that support the virion-incorporation of Spike are incompletely defined. We noted an unusual feature of human sarbecovirus Spike proteins: their cytoplasmic domains (CDs) contain a stretch of acidic amino acids (DEDDSE). This sequence resembles a cluster of acidic residues, or acidic cluster (AC) motif, found in the cytoplasmic domain of the cellular endoprotease Furin. In Furin, the acidic cluster acts as a protein sorting signal, supporting its intracellular localization at the

Identifiers

PMID40654855
PMCPMC12247644

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.