Evidence map›Paper›PMID 40654676›Full record

ArticlebioRxiv : the preprint server for biology2025

mtgRNA-db: An annotated database of multi-target CRISPR-Cas9 guide-RNAs in the human genome.

Aram S Modrek, Khoi Huynh, Catherine Do, Jerome Karp, Yingwen Ding, Ze-Yan Zhang, Ravesanker Ezhilarasan, Belen Valor, Giulia Cova, Jane A Skok and 1 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Aram S ModrekDepartment of Radiation Oncology, Norris Comprehensive Cancer Center, Keck School of Medicine of USC, Los Angeles, CA, 90033.ORCID 0000-0001-7586-9833
Khoi HuynhDepartment of Radiation Oncology, Norris Comprehensive Cancer Center, Keck School of Medicine of USC, Los Angeles, CA, 90033.
Catherine DoDepartment of Pathology, New York University Langone Health, New York, NY 10016, USA.
Jerome KarpDepartment of Radiation Oncology, New York University Langone Health, New York, NY 10016, USA.
Yingwen DingDepartment of Radiation Oncology, New York University Langone Health, New York, NY 10016, USA.
Ze-Yan ZhangDepartment of Radiation Oncology, New York University Langone Health, New York, NY 10016, USA.
Ravesanker EzhilarasanDepartment of Radiation Oncology, New York University Langone Health, New York, NY 10016, USA.
Belen ValorDepartment of Radiation Oncology, New York University Langone Health, New York, NY 10016, USA.
Giulia CovaDepartment of Pathology, New York University Langone Health, New York, NY 10016, USA.
Jane A SkokDepartment of Pathology, New York University Langone Health, New York, NY 10016, USA.ORCID 0000-0002-4145-1516
Erik P SulmanDepartment of Radiation Oncology, New York University Langone Health, New York, NY 10016, USA.ORCID 0000-0003-4933-9120

Funding

Project-005UL1TR001445 · NCATS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BREDELLA, MIRIAM ANTOINETTE, HOCHMAN, JUDITH S · 2015 to 2025
$103.5M
Nuclear organization and its role in gene regulationR35GM122515 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Jane Amanda Skok · 2017 to 2026
$7.1M
Epigenetic alterations after DNA damage repair drive treatment resistance in glioblastomaK08CA263302 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Aram Sandaldjian Modrek · 2022 to 2026
$709k
NCATS NIH HHS UL1 TR001445NCI NIH HHS K08 CA263302NIGMS NIH HHS R35 GM122515
6 · The paper itself

Abstract

CRISPR-Cas9 guide-RNA design tools can be used to identify guide-RNAs that target single human genomic loci. However, these approaches limit their effect to a single locus. Here, we generate a database of potential individual guide-RNAs that target multiple sites in the genome at once. All guide-RNAs in this database are curated with on- and off-target quantification and enrichment scores for genomic elements such as gene elements, regulatory elements, repetitive elements, and transcription factor motifs. This tool enables rationale mass targeting of genomic loci with a single guide for functional studies. We created a web-app for user-friendly guide-RNA selection (https://modreklab.shinyapps.io/guiderna/).

Indexed as

CRISPR-Cas9databasegenomicsguide-RNAmulti-target guide-RNA

Identifiers

PMID40654676
PMCPMC12247669

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.