Evidence map›Paper›PMID 40654619›Full record

ArticlebioRxiv : the preprint server for biology2025

Quantifying cancer- and drug-induced changes in Shannon information capacity of RTK signaling.

Paweł Nałęcz-Jawecki, Lee Roth, Frederic Grabowski, Sunnie Li, Marek Kochańczyk, Lukasz J Bugaj, Tomasz Lipniacki

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Paweł Nałęcz-JaweckiInstitute of Fundamental Technological Research, Polish Academy of Sciences, Warsaw, Poland.ORCID 0000-0001-5067-6162
Lee RothDepartment of Bioengineering, University of Pennsylvania, Philadelphia, PA, 19104, USA.ORCID 0000-0001-9290-2463
Frederic GrabowskiInstitute of Fundamental Technological Research, Polish Academy of Sciences, Warsaw, Poland.ORCID 0000-0003-4070-9500
Sunnie LiDepartment of Bioengineering, University of Pennsylvania, Philadelphia, PA, 19104, USA.ORCID 0000-0002-9618-4718
Marek KochańczykInstitute of Fundamental Technological Research, Polish Academy of Sciences, Warsaw, Poland.ORCID 0000-0003-1215-3920
Lukasz J BugajDepartment of Bioengineering, University of Pennsylvania, Philadelphia, PA, 19104, USA.ORCID 0000-0002-0749-2912
Tomasz LipniackiInstitute of Fundamental Technological Research, Polish Academy of Sciences, Warsaw, Poland.ORCID 0000-0002-3488-2561

Funding

Harnessing protein clustering to understand, identify, and manipulate cellular systemsR35GM138211 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI Lukasz Bugaj · 2020 to 2026
$3.3M
NIGMS NIH HHS R35 GM138211
6 · The paper itself

Abstract

Signaling pathways transmit and process information, enabling cells to respond accurately to external cues. Disease states like cancer can corrupt signal transmission, though the magnitude to which they reduce information capacity has not been quantified. Here we apply pseudo-random pulsatile optogenetic stimulation, live-cell imaging, and information theory to compare the information capacity of receptor tyrosine kinase (RTK) signaling pathways in EML4-ALK-driven lung cancer cells (STE-1) and non-transformed lung epithelial cells (BEAS-2B). The information rate through the RTK/ERK pathway in STE-1 cells was below 0.5 bit/hour but increased to 3 bit/hour after oncogene inhibition. Information was transmitted by only 50-70% of cells, whose channel capacity (maximum information rate) was estimated through

Indexed as

CancerChannel capacityEML4-ALK oncogeneMAPK pathwayOptogenetics

Identifiers

PMID40654619
PMCPMC12247869

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.