Evidence map›Paper›PMID 40652167›Full record

ArticleBMC genomics2025

Comparative genomics analysis of Bacillus altitudinis G03 provides insights into its biocontrol and probiotic traits.

Dongli Chen, Jie Lin, Yongen Yan, Jiang Pi, Jun-Fa Xu, Lingming Chen

Abstract readComparative Study
In one paragraph

Article in BMC genomics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Dongli ChenInstitute of Laboratory Medicine, School of Medical Technology, Guangdong Medical University, Dongguan, 523808, China.
Jie LinInstitute of Laboratory Medicine, School of Medical Technology, Guangdong Medical University, Dongguan, 523808, China.
Yongen YanInstitute of Laboratory Medicine, School of Medical Technology, Guangdong Medical University, Dongguan, 523808, China.
Jiang PiInstitute of Laboratory Medicine, School of Medical Technology, Guangdong Medical University, Dongguan, 523808, China.
Jun-Fa XuInstitute of Laboratory Medicine, School of Medical Technology, Guangdong Medical University, Dongguan, 523808, China.
Lingming ChenInstitute of Laboratory Medicine, School of Medical Technology, Guangdong Medical University, Dongguan, 523808, China. chenlm3@mail3.sysu.edu.cn.

Funding

Doctoral Initial Funding of Guangdong Medical University 4SG24221GNational Natural Science Foundation of China 82302537Project of Songshan Lake Innovation Center of Medicine & Engineering of Guangdong Medical University 4SG22317P
6 · The paper itself

Abstract

backgroundBacillus has been gradually applied to human production activities as a new type of biological control agent and probiotic preparation. This study investigates a newly isolated Bacillus altitudinis G03 utilizing whole genome sequencing, comparative genome analysis and in vitro experiments to comprehensively disclose its beneficial traits.

resultsAccording to whole genome sequencing and assembly data, the genome of G03 consists of a circular chromosome containing 10 gene clusters linked to the biosynthesis of secondary metabolites, 139 CAZymes, an antibiotic resistance gene, and 2 prophage elements, which show great potential in antibacterial and antifungal properties. G03 also encodes secreted proteins involved in important biological processes such as nutrient absorption, colonization, quorum sensing, and antibiotic synthesis. In vitro experiments confirm that G03 successfully inhibits the growth of several fungi and pathogenic bacteria, hydrolyzes protein and cellulose, and is capable of forming strong adhesive biofilms. Furthermore, comparative genomics analysis reveals that G03 contains 78 unique genes associated with various functions such as bacteriocin immunity and sporulation. Selective pressure analysis indicates that the genes associated with integral components of membrane and regulation of transcription are strongly positively selected, which may shape the evolution of G03.

conclusionsCollectively, these results provide a strong theoretical framework for further research and utilization of B. altitudinis G03 as a novel probiotic and biocontrol agent.

Indexed as

BacillusGenome, BacterialGenomicsProbioticsBiological Control AgentsPhylogenyWhole Genome SequencingBiological Control AgentsBacillus altitudinisBiocontrolComparative genomics analysis

Identifiers

PMID40652167
PMCPMC12255048

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.