Evidence map›Paper›PMID 40650973›Full record

ArticleNucleic acids research2025

SAM-AMP lyases in type III CRISPR defence.

Haotian Chi, Stephen McMahon, Lukas Daniel-Pedersen, Shirley Graham, Tracey M Gloster, Malcolm F White

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Structural mechanism of SAM-AMP and SAM-AMPNature communications · 2026
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Haotian ChiSchool of Biology, University of St Andrews, St Andrews, Fife KY16 9ST, United Kingdom.
Stephen McMahonSchool of Biology, University of St Andrews, St Andrews, Fife KY16 9ST, United Kingdom.
Lukas Daniel-PedersenSchool of Biology, University of St Andrews, St Andrews, Fife KY16 9ST, United Kingdom.
Shirley GrahamSchool of Biology, University of St Andrews, St Andrews, Fife KY16 9ST, United Kingdom.
Tracey M GlosterSchool of Biology, University of St Andrews, St Andrews, Fife KY16 9ST, United Kingdom.ORCID 0000-0003-4692-2222
Malcolm F WhiteSchool of Biology, University of St Andrews, St Andrews, Fife KY16 9ST, United Kingdom.ORCID 0000-0003-1543-9342

Funding

Biotechnology and Biological Sciences Research Council BB/T004789/1European Research Council Advanced Grant 101018608University of St Andrews
6 · The paper itself

Abstract

Type III CRISPR systems detect non-self RNA and activate the enzymatic Cas10 subunit, which generates nucleotide second messengers for activation of ancillary effectors. Although most signal via cyclic oligoadenylate, an alternative class of signalling molecule SAM-AMP, formed by conjugating ATP and S-adenosylmethionine, was described recently. SAM-AMP activates a trans-membrane effector of the CorA magnesium transporter family to provide anti-phage defence. Intriguingly, immunity also requires SAM-AMP degradation by means of a specialized CRISPR-encoded NrN family phosphodiesterase in Bacteroides fragilis. In Clostridium botulinum, the nrn gene is replaced by a gene encoding a SAM-AMP lyase. Here, we investigate the structure and activity of C. botulinum SAM-AMP lyase, which can substitute for the nrn gene to provide CorA-mediated immunity in Escherichia coli. The structure of SAM-AMP lyase bound to its reaction product 5'-methylthioadenosine-AMP reveals key details of substrate binding and turnover by this PII superfamily protein. Bioinformatic analysis revealed a phage-encoded SAM-AMP lyase that degrades SAM-AMP efficiently in vitro, consistent with an anti-CRISPR function.

Indexed as

Bacterial ProteinsCRISPR-Cas SystemsLyasesCrystallography, X-RayDeoxyadenosinesEscherichia coliModels, MolecularS-AdenosylmethionineThionucleosides5'-methylthioadenosineBacterial ProteinsDeoxyadenosinesLyasesS-AdenosylmethionineThionucleosides

Identifiers

PMID40650973
PMCPMC12255297

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.