Evidence map›Paper›PMID 40650906›Full record

ArticleCell reports2025

Effects of aging on gene expression networks in the Drosophila genetic reference panel.

Suxu Tan, Mary Anna Carbone, Shanshan Zhou, Tatiana Morozova, Gunjan Arya, Fei Zhang, Robert R H Anholt, Wen Huang, Trudy F C Mackay

Abstract read
In one paragraph

Article in Cell reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Suxu TanDepartment of Animal Science, Michigan State University, 474 S Shaw Lane, East Lansing, MI 48824, USA.
Mary Anna CarboneProgram in Genetics, W. M. Keck Center for Behavioral Biology and Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695, USA.
Shanshan ZhouProgram in Genetics, W. M. Keck Center for Behavioral Biology and Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695, USA.
Tatiana MorozovaProgram in Genetics, W. M. Keck Center for Behavioral Biology and Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695, USA.
Gunjan AryaProgram in Genetics, W. M. Keck Center for Behavioral Biology and Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695, USA.
Fei ZhangDepartment of Animal Science, Michigan State University, 474 S Shaw Lane, East Lansing, MI 48824, USA.
Robert R H AnholtProgram in Genetics, W. M. Keck Center for Behavioral Biology and Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695, USA; Center for Human Genetics and Department of Genetics and Biochemistry, Clemson University, 114 Gregor Mendel Circle, Greenwood, SC 29646, USA.
Wen HuangDepartment of Animal Science, Michigan State University, 474 S Shaw Lane, East Lansing, MI 48824, USA. Electronic address: huangw53@msu.edu.
Trudy F C MackayProgram in Genetics, W. M. Keck Center for Behavioral Biology and Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695, USA; Center for Human Genetics and Department of Genetics and Biochemistry, Clemson University, 114 Gregor Mendel Circle, Greenwood, SC 29646, USA. Electronic address: tmackay@clemson.edu.

Funding

Statistical Methods for Gene Regulatory Analysis From Single Cell Genomics DataP20GM139769 · NIGMS · CLEMSON UNIVERSITY · PI ANHOLT, ROBERT R. H, MACKAY, TRUDY F. · 2021 to 2025
$10.8M
Genetic Basis of Lifespan and Healthspan Extension by ACE Inhibition in DrosophilaR01AG073181 · NIA · CLEMSON UNIVERSITY · PI Robert R. H Anholt, MARIA DE LUCA · 2022 to 2026
$2.4M
Systems Genetics of Drosophila Life SpanR01AG043490 · NIA · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI ANHOLT, ROBERT R. H, CARBONE, MARY ANNA · 2013 to 2017
$1.9M
Genetic variation and evolution of translational control in DrosophilaR01GM138423 · NIGMS · MICHIGAN STATE UNIVERSITY · PI HUANG, WEN · 2020 to 2024
$1.7M
NIA NIH HHS R01 AG043490NIA NIH HHS R01 AG073181NIGMS NIH HHS P20 GM139769NIGMS NIH HHS R01 GM138423
6 · The paper itself

Abstract

The genetic basis of naturally occurring variation in organismal senescence and lifespan remains largely unknown. We quantified genome-wide gene expression levels of young and 3-week-old flies of the Drosophila Genetic Reference Panel and performed a systems genetics analysis integrating genomic, transcriptomic, and organismal phenotype variation. Aging had widespread but small effects on nearly the entire transcriptome, which were dependent on the genetic background. Although the co-expression module structure was globally robust and largely preserved, connectivity of genes in some pathways decreased with age in both sexes. We mapped expression quantitative trait loci for young and aged flies and found aging led to reduced genetic control of gene expression. The association between gene expression and organismal senescence and lifespan was weak for individual genes but enriched in pathways. This study demonstrates the power of leveraging natural variation and integrative systems genetics analysis to identify genes and pathways related to senescence and aging.

Indexed as

AgingDrosophila melanogasterGene Regulatory NetworksAnimalsFemaleGene Expression ProfilingLongevityMalePhenotypeQuantitative Trait LociTranscriptomeassociation studyco-expression networksCP: GenomicseQTLstranscriptional senescencetranscriptome

Identifiers

PMID40650906
PMCPMC12573664

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.