Evidence map›Paper›PMID 40649962›Full record

ArticleInternational journal of molecular sciences2025

Multi-Time Point Transcriptome Analysis and Functional Validation Revealed

Hongxue Ma, Siping Deng, Congcong Kong, Yulun Zhang, Tong Zhao, Jialei Ji, Yong Wang, Yangyong Zhang, Mu Zhuang, Limei Yang and 7 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in International journal of molecular sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Hongxue MaDepartment of Horticulture, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China.
Siping DengState Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Congcong KongState Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Yulun ZhangState Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China.ORCID 0009-0006-6626-8175
Tong ZhaoState Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Jialei JiState Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Yong WangState Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Yangyong ZhangState Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China.ORCID 0000-0003-1337-4899
Mu ZhuangState Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Limei YangState Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Marina LebedevaAll-Russia Research Institute of Agricultural Biotechnology, Russian Academy of Sciences, 119991 Moscow, Russia.ORCID 0000-0001-5711-8331
Vasiliy TaranovAll-Russia Research Institute of Agricultural Biotechnology, Russian Academy of Sciences, 119991 Moscow, Russia.ORCID 0000-0002-0728-0346
Anna M ArtemyevaFederal Research Center N.I. Vavilov All-Russian Institute of Plant Genetic Resources, 190000 St. Petersburg, Russia.ORCID 0000-0002-6551-5203
Zhiyuan FangDepartment of Horticulture, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China.
Jingquan YuDepartment of Horticulture, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China.ORCID 0000-0002-7626-1165
Zhangjian HuDepartment of Horticulture, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China.ORCID 0000-0002-7387-9699
Honghao LvState Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China.ORCID 0000-0003-2635-3042

Funding

the China Agriculture Research System of MOF and MARA CARS-23the National Key R&D Program of China 2023YFE0111400the Russian Ministry of Science and Higher Education No. 075-15-2023-582the Science and Technology Innovation Program of the Chinese Academy of Agricultural Sciences CAAS-ASTIP-IVFCAASthe Zhejiang Provincial Natural Science Foundation of China LY22C150002
6 · The paper itself

Abstract

4-coumarate-CoA ligase (4CL) plays a crucial role in the phenylpropanoid metabolic pathway and is a key enzyme involved in plant growth and stress responses. Black rot, caused by

Indexed as

BrassicaCoenzyme A LigasesDisease ResistancePlant DiseasesPlant ProteinsTranscriptomeGene Expression ProfilingGene Expression Regulation, PlantXanthomonas campestrisCoenzyme A LigasesPlant Proteins4CL gene familyblack rotcabbagefunctional validationmulti-time point transcriptome

Identifiers

PMID40649962
PMCPMC12249714

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.