Evidence map›Paper›PMID 40645928›Full record

ArticleNature communications2025

Trehalose catalytic shift inherently enhances phenotypic heterogeneity and multidrug resistance in Mycobacterium tuberculosis.

Jae Jin Lee, Daniel H Swanson, Sun-Kyung Lee, Stephanie Dihardjo, Gi Yong Lee, Sree Gelle, Hoon Je Seong, Emily R M Bravo, Zachary E Taylor, Michael S Van Nieuwenhze and 6 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Tre-DST: A Drug Susceptibility Test forACS infectious diseases · 2026
    Article
  4. Beyond culturability: VBNC-like and differentially culturableFrontiers in cellular and infection microbiology · 2026
    Review
  5. Heteroresistance inFrontiers in cellular and infection microbiology · 2026
    Review
  6. Article
  7. Drug resistance mechanisms inFrontiers in pharmacology · 2026
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors.

Jae Jin LeeDepartment of Molecular Microbiology and Immunology, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0001-8317-437X
Daniel H SwansonDepartment of Chemistry and Biochemistry, Central Michigan University, Mount Pleasant, MI, USA.
Sun-Kyung LeeDivision of Immunology and Cellular Immunology, International Tuberculosis Research Center, Changwon, Republic of Korea.
Stephanie DihardjoDepartment of Molecular Microbiology and Immunology, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA.
Gi Yong LeeDepartment of Molecular Microbiology and Immunology, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA.
Sree GelleDepartment of Molecular Microbiology and Immunology, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA.
Hoon Je SeongDepartment of Biological Science, Kunsan National University, Gunsan, Republic of Korea.ORCID http://orcid.org/0000-0002-9697-2677
Emily R M BravoDepartment of Chemistry and Biochemistry, Central Michigan University, Mount Pleasant, MI, USA.
Zachary E TaylorDepartment of Chemistry and Biochemistry, Baylor University, Waco, TX, USA.
Michael S Van NieuwenhzeDepartment of Chemistry and Biochemistry, Baylor University, Waco, TX, USA.
Abhyudai SinghDepartment of Electrical and Computer Engineering, Biomedical Engineering, Mathematical Sciences, University of Delaware, Newark, DE, USA.ORCID http://orcid.org/0000-0002-1451-2838
Jong-Seok LeeDepartment of Biological Science, Kunsan National University, Gunsan, Republic of Korea.
Seokyong EumDepartment of Biological Science, Kunsan National University, Gunsan, Republic of Korea.
SangNae ChoDepartment of Biological Science, Kunsan National University, Gunsan, Republic of Korea.
Benjamin M SwartsDepartment of Chemistry and Biochemistry, Central Michigan University, Mount Pleasant, MI, USA.
Hyungjin EohDepartment of Molecular Microbiology and Immunology, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA. heoh@usc.edu.ORCID http://orcid.org/0000-0001-8774-6400

Funding

Interplay of M. tuberculosis trehalose metabolism and its pathogenesis and drug resistanceR01AI168088 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Hyungjin Eoh · 2023 to 2026
$2.6M
Generalized fluctuation test for deciphering phenotypic switching within cell populationsR35GM148351 · NIGMS · UNIVERSITY OF DELAWARE · PI Abhyudai Singh · 2023 to 2026
$1.6M
Metabolic compensation in Mycobacterium tuberculosis for the formation of persistersR21AI139386 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI EOH, HYUNGJIN · 2019 to 2020
$454k
Center for Hierarchical Manufacturing, National Science Foundation (Center for Hierarchical Manufacturing) 2117338NIAID NIH HHS R01 AI168088NIAID NIH HHS R21 AI139386NIGMS NIH HHS R35 GM148351U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R01AI168088U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R21AI139386U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R35GM148351
6 · The paper itself

Abstract

Drug-resistance (DR) in bacteria often develops through the repetitive formation of drug-tolerant persisters, which survive antibiotics without genetic changes. It is unclear whether Mycobacterium tuberculosis (Mtb), the bacterium that causes tuberculosis (TB), undergoes a similar transitioning process. Recent studies highlight changes in trehalose metabolism as crucial for persister formation and drug resistance. Here, we observe that mutants lacking trehalose catalytic shift activity exhibited fewer DR mutants due to decreased persisters. This shift enhances Mtb survival during antibiotic treatment by increasing metabolic heterogeneity and drug tolerance, facilitating drug resistance. Rifampicin (RIF)-resistant bacilli display cross-resistance to other antibiotics linked to higher trehalose catalytic shift, explaining how multidrug resistance (MDR) can follow RIF-resistance. In particular, the HN878 W-Beijing strain exhibits higher trehalose catalytic shift, increasing MDR risk. Both genetic and pharmacological inactivation of this shift reduces persister formation and MDR development, suggesting trehalose catalytic shift as a potential therapeutic target to combat TB resistance.

Indexed as

Drug Resistance, Multiple, BacterialMycobacterium tuberculosisTrehaloseAntitubercular AgentsBacterial ProteinsMicrobial Sensitivity TestsMutationPhenotypeRifampinTuberculosis, Multidrug-ResistantAntitubercular AgentsBacterial ProteinsRifampinTrehalose

Identifiers

PMID40645928
PMCPMC12254287

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.