Evidence map›Paper›PMID 40643203›Full record

ArticleThe Journal of heredity2026

A genome assembly for Lahontan Cutthroat Trout, Oncorhynchus clarkii henshawi.

Cheyenne Y Payne, Merly Escalona, Shannon R Kieran Blair, Amanda J Finger, Richard E Green, Devon Pearse, Jeff Rodzen, John Carlos Garza

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in The Journal of heredity, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Cheyenne Y PayneInstitute of Marine Sciences, University of California, Santa Cruz, CA, United States.
Merly EscalonaDepartment of Biomolecular Engineering, University of California, Santa Cruz, CA, United States.ORCID 0000-0003-0213-4777
Shannon R Kieran BlairDepartment of Animal Science, University of California, Davis, CA, United States.ORCID 0000-0002-2855-6487
Amanda J FingerDepartment of Animal Science, University of California, Davis, CA, United States.ORCID 0000-0003-3850-3685
Richard E GreenDepartment of Biomolecular Engineering, University of California, Santa Cruz, CA, United States.
Devon PearseSouthwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Santa Cruz, CA, United States.ORCID 0000-0003-1934-6493
Jeff RodzenCalifornia Department of Fish & Wildlife, Sacramento, CA, United States.
John Carlos GarzaInstitute of Marine Sciences, University of California, Santa Cruz, CA, United States.ORCID 0000-0002-7325-6803

Funding

Pacific Biosciences PacBio RS Single Molecule Real Time SequencerS10OD018174 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROKHSAR, DANIEL SOLEYMAN · 2014 to 2014
$600k
Acquisition of Covaris E220 and Sciclone G3 systems for high throughput sequencinS10OD010786 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI COMAI, LUCA · 2012 to 2012
$311k
California Conservation Genomics ProjectCalifornia Department of Fish and Wildlife and the National Oceanic and Atmospheric AdministrationNIH HHS S10 OD010786NIH HHS S10 OD018174University of California RSI-19-690224
6 · The paper itself

Abstract

Cutthroat trout (Oncorhynchus clarkii) are diverse Pacific salmonids widely distributed throughout western North America. Distinct lineages of cutthroat trout have been defined based on morphology, geography, and genetic differences. Several of these, including Lahontan cutthroat trout (Oncorhynchus clarkii henshawi), are classified as threatened or in danger of extinction. Despite their precarious conservation status, few genomic resources have been developed for these lineages. In an effort to promote the development and application of genomic approaches for research and conservation of this group, we present the first high-quality reference genome for Lahontan cutthroat trout. We use this genome assembly to describe genomic synteny and structural rearrangements with their sister species, rainbow trout (O. mykiss), as well as with the diverged westslope cutthroat trout (O. clarkii lewisi) lineage.

Indexed as

GenomeOncorhynchusAnimalsGenomicsOncorhynchus mykissPhylogenySyntenyCalifornia Conservation Genomics Projectcutthroat troutgenomic resourcessalmonidstructural variation

Identifiers

PMID40643203
PMCPMC12767203

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.