Evidence map›Paper›PMID 40640880›Full record

ArticleJournal of translational medicine2025

Spatial profiling reveals unique immune microenvironment in premenopausal triple-negative breast cancer associated with therapy response.

Vidya P Nimbalkar, V P Snijesh, Savitha Rajarajan, C E Anupama, S Mahalakshmi, Annie Alexander, Deshica Dechamma, Manju Moorthy, Gopalakrishna Ramaswamy, Rakesh Ramesh and 2 more

Abstract read
In one paragraph

Article in Journal of translational medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Trial
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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

12 authors.

Vidya P NimbalkarDivision of Molecular Medicine, St. John's Research Institute, St. John's Medical College, Bangalore, Karnataka, India.
V P SnijeshDivision of Molecular Medicine, St. John's Research Institute, St. John's Medical College, Bangalore, Karnataka, India.
Savitha RajarajanDivision of Molecular Medicine, St. John's Research Institute, St. John's Medical College, Bangalore, Karnataka, India.
C E AnupamaDivision of Molecular Medicine, St. John's Research Institute, St. John's Medical College, Bangalore, Karnataka, India.
S MahalakshmiDivision of Molecular Medicine, St. John's Research Institute, St. John's Medical College, Bangalore, Karnataka, India.
Annie AlexanderDivision of Molecular Medicine, St. John's Research Institute, St. John's Medical College, Bangalore, Karnataka, India.
Deshica DechammaTheracues Innovations Private Limited, Research and Development, Bangalore, Karnataka, India.
Manju MoorthyTheracues Innovations Private Limited, Research and Development, Bangalore, Karnataka, India.
Gopalakrishna RamaswamyTheracues Innovations Private Limited, Research and Development, Bangalore, Karnataka, India.
Rakesh RameshDepartment of Surgical Oncology, St. John's Medical College and Hospital, Bangalore, Karnataka, India.
B S SrinathDepartment of Surgery, Sri Shankara Cancer Hospital and Research Centre, Bangalore, Karnataka, India.
Jyothi S PrabhuDivision of Molecular Medicine, St. John's Research Institute, St. John's Medical College, Bangalore, Karnataka, India. jyothi@sjri.res.in.ORCID 0000-0002-2269-3704

Funding

The Wellcome Trust DBT India Alliance IA/CPHI/18/1/503938
6 · The paper itself

Abstract

backgroundTriple-negative breast cancer (TNBC) lacks targeted therapies, leading to a poor prognosis. Younger patients with TNBC often present with aggressive disease and exhibit distinct tumor microenvironments (TME). We performed spatial profiling to understand the influence of menopausal status on the immune environment, tumor progression, and therapy response.

methodsEleven treatment-naive TNBC tumors were examined in epithelial and non-epithelial areas using digital spatial profiling to identify differentially expressed markers and pathways. Deconvolution methods were employed to identify immune cell subtypes, and the protein expression of T and B cells was confirmed. The prognostic utility of the identified genes and pathways was validated using the METABRIC and SCAN-B datasets. The expression of target genes was analyzed in the I-SPY 2 trial data to understand their influence on the response to specific therapies.

resultsPremenopausal tumors formed a distinct cluster characterized by the upregulation of cell activation and antigen presentation pathways. In contrast, T cell checkpoint, cancer antigen, and PI3K-AKT pathways were downregulated. External datasets validated these findings, showing a lower hazard and better prognosis for genes upregulated in premenopausal tumors. An enrichment of CD8 + T cells, endothelial cells, and monocytes was observed, along with increased intratumoral protein expression of CD8, CD4, and CD20. Premenopausal tumors demonstrated better responses to PARP and HSP90 inhibitors but showed lower sensitivity to Pembrolizumab and PI3K-AKT inhibitors compared to postmenopausal tumors in the I-SPY 2 trial data.

conclusionOur study underscores the importance of menopausal status in shaping the TME within TNBC, revealing distinct immune landscapes and therapy responses. These findings highlight the need for larger prospective studies to validate differential treatment strategies in younger patients.

Indexed as

PremenopauseTriple Negative Breast NeoplasmsTumor MicroenvironmentAdultCluster AnalysisFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMiddle AgedPrognosisTreatment OutcomeDigital spatial profilingImmune profilingPremenopausalTherapy responseTriple negative breast cancerTumor microenvironment

Identifiers

PMID40640880
PMCPMC12243298

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.