Evidence map›Paper›PMID 40640125›Full record

ArticleNature communications2025

Super-resolution microscopy of mitochondrial mRNAs.

Stefan Stoldt, Frederike Maass, Michael Weber, Sven Dennerlein, Peter Ilgen, Jutta Gärtner, Aysenur Canfes, Sarah V Schweighofer, Daniel C Jans, Peter Rehling and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Stefan Stoldt *Department of NanoBiophotonics, Max Planck Institute for Multidisciplinary Sciences, RG Mitochondrial Structure and Dynamics, Göttingen, Germany.
Frederike Maass *Department of NanoBiophotonics, Max Planck Institute for Multidisciplinary Sciences, RG Mitochondrial Structure and Dynamics, Göttingen, Germany.
Michael WeberDepartment of NanoBiophotonics, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany.ORCID http://orcid.org/0000-0001-9680-7543
Sven DennerleinDepartment of Cellular Biochemistry, University Medical Center Göttingen, Göttingen, Germany.
Peter IlgenDepartment of NanoBiophotonics, Max Planck Institute for Multidisciplinary Sciences, RG Mitochondrial Structure and Dynamics, Göttingen, Germany.ORCID http://orcid.org/0009-0002-9895-8577
Jutta GärtnerCluster of Excellence "Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells" (MBExC), University of Göttingen, Göttingen, Germany.
Aysenur CanfesDepartment of NanoBiophotonics, Max Planck Institute for Multidisciplinary Sciences, RG Mitochondrial Structure and Dynamics, Göttingen, Germany.ORCID http://orcid.org/0009-0008-4042-3194
Sarah V SchweighoferDepartment of NanoBiophotonics, Max Planck Institute for Multidisciplinary Sciences, RG Mitochondrial Structure and Dynamics, Göttingen, Germany.ORCID http://orcid.org/0000-0002-9300-3096
Daniel C JansDepartment of NanoBiophotonics, Max Planck Institute for Multidisciplinary Sciences, RG Mitochondrial Structure and Dynamics, Göttingen, Germany.ORCID http://orcid.org/0000-0002-6356-9742
Peter RehlingCluster of Excellence "Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells" (MBExC), University of Göttingen, Göttingen, Germany.ORCID http://orcid.org/0000-0001-5661-5272
Stefan JakobsDepartment of NanoBiophotonics, Max Planck Institute for Multidisciplinary Sciences, RG Mitochondrial Structure and Dynamics, Göttingen, Germany. sjakobs@gwdg.de.ORCID http://orcid.org/0000-0002-8028-3121

Funding

EC | EC Seventh Framework Programm | FP7 Ideas: European Research Council (FP7-IDEAS-ERC - Specific Programme: "Ideas" Implementing the Seventh Framework Programme of the European Community for Research, Technological Development and Demonstration Activities (2007 to 2013)) ERCAdG No. 835102
6 · The paper itself

Abstract

Mitochondria contain their own DNA (mtDNA) and a dedicated gene expression machinery. As the mitochondrial dimensions are close to the diffraction limit of classical light microscopy, the spatial distribution of mitochondrial proteins and in particular of mitochondrial mRNAs remains underexplored. Here, we establish single-molecule fluorescence in situ hybridization (smFISH) combined with STED and MINFLUX super-resolution microscopy (nanoscopy) to visualize individual mitochondrial mRNA molecules and associated proteins. STED nanoscopy reveals the spatial relationships between distinct mRNA species and proteins such as the RNA granule marker GRSF1, demonstrating adaptive changes in mRNA distribution and quantity in challenged mammalian cells and patient-derived cell lines. Notably, STED-smFISH shows the release of mRNAs during apoptosis, while MINFLUX reveals the folding of the mRNAs into variable shapes, as well as their spatial proximity to mitochondrial ribosomes. These protocols are transferable to various cell types and open new avenues for understanding mitochondrial gene regulation in health and disease.

Indexed as

MitochondriaRNA, MessengerRNA, MitochondrialAnimalsApoptosisHeLa CellsHumansIn Situ Hybridization, FluorescenceMitochondrial ProteinsSingle Molecule Imagingmitochondrial messenger RNAMitochondrial ProteinsRNA, MessengerRNA, Mitochondrial

Identifiers

PMID40640125
PMCPMC12246080

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.