Evidence map›Paper›PMID 40637235›Full record

ArticleNucleic acids research2025

FASTKD5 processes mitochondrial pre-mRNAs at noncanonical cleavage sites.

Hana Antonicka, Ana Vučković, Woranontee Weraarpachai, Seungwoo Hong, Michele Brischigliaro, Ahram Ahn, Antoni Barrientos, Hauke S Hillen, Eric A Shoubridge

Erratum issuedAbstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Hana AntonickaDepartment of Human Genetics, McGill University, Montreal, QCH3A2B4, Canada.ORCID 0000-0002-2525-2867
Ana VučkovićResearch Group Structure and Function of Molecular Machines, Max Planck Institute for Multidisciplinary Sciences, Göttingen 37077, Germany.ORCID 0009-0001-5774-8816
Woranontee WeraarpachaiDepartment of Biochemistry, Faculty of Medicine, Chiang Mai University, Chiang Mai 50200, Thailand.
Seungwoo HongDepartment of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, Miami, FL 33136, United States.
Michele BrischigliaroDepartment of Neurology, University of Miami Miller School of Medicine, Miami, FL 33136, United States.ORCID 0000-0003-1520-1342
Ahram AhnDepartment of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, Miami, FL 33136, United States.
Antoni BarrientosDepartment of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, Miami, FL 33136, United States.ORCID 0000-0001-9018-3231
Hauke S HillenDepartment of Cellular Biochemistry, University Medical Center Göttingen, Göttingen 37073, Germany.ORCID 0000-0002-1206-0129
Eric A ShoubridgeDepartment of Human Genetics, McGill University, Montreal, QCH3A2B4, Canada.ORCID 0000-0003-1498-9473

Funding

Mitochondrial Biogenesis in Health and DiseaseR35GM118141 · NIGMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI BARRIENTOS, ANTONI · 2016 to 2025
$8.9M
CIHR #FRN178373Deutsche Forschungsgemeinschaft EXC 2067/1-390729940European UnionGeorg-August University of GöttingenGöttingen Graduate School for Neurosciences, Biophysics, and Molecular Biosciences GSC 226International Max Planck Research SchoolMDA MDA 1288334Muscular Dystrophy Association 1069392National Institute of General Medicine R35-GM118141NIGMS NIH HHS R35 GM118141
6 · The paper itself

Abstract

The first post-transcriptional step in mammalian mitochondrial gene expression, required for the synthesis of the 13 polypeptides encoded in mitochondrial DNA (mtDNA), is endonucleolytic cleavage of the primary polycistronic transcripts. Excision of the mtDNA-encoded transfer RNAs (tRNAs) releases most mature RNAs; however, processing of three noncanonical messenger RNAs (mRNAs) not flanked by tRNAs (CO1, CO3, and CYB) requires FASTKD5. To investigate the molecular mechanism involved, we created knockout human cell lines to use as assay systems. The absence of FASTKD5 produced a severe OXPHOS assembly defect due to the inability to translate two unprocessed noncanonical mRNAs and predicted altered folding patterns specifically at the 5'-end of the CO1 coding sequence. Structural features 13-15 nt upstream of the CO1 and CYB cleavage sites suggest FASTKD5 recognition mechanisms. Remarkably, a map of essential FASTKD5 amino acid residues revealed RNA substrate specificity; however, a key, putative active site residue was required for processing all three noncanonical pre-RNAs. Mutating this site did not significantly alter the binding of any client RNA substrate. A reconstituted in vitro system showed that wild-type, but not mutant, FASTKD5, was able to cleave client substrates correctly. These results establish FASTKD5 as the missing piece of biochemical machinery required to completely process the primary mitochondrial transcript.

Indexed as

MitochondriaMitochondrial ProteinsRNA HelicasesRNA, MessengerRNA PrecursorsRNA Processing, Post-TranscriptionalCatalytic DomainDNA, MitochondrialHumansOxidative PhosphorylationRNA, MitochondrialRNA, TransferSubstrate SpecificityDNA, MitochondrialMitochondrial ProteinsRNA HelicasesRNA, MessengerRNA, MitochondrialRNA PrecursorsRNA, Transfer

Identifiers

PMID40637235
PMCPMC12242768

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.