Evidence map›Paper›PMID 40637232›Full record

ArticleNucleic acids research2025

Telomeric repeat-containing RNA increases in aged human cells.

Yu-Hung Hsieh, Chin-Hua Tai, Meng-Ting Yeh, Yu-Chen Chen, Po-Cheng Yang, Chien-Ping Yen, Hong-Jhih Shen, Chan-Hsien Yeh, Hung-Chih Kuo, Der-Sheng Han and 1 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Translational Geroscience Strategies for Delaying Multimorbidity.ACS pharmacology & translational science · 2026
    Review
  4. Article
  5. Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yu-Hung HsiehInstitute of Molecular and Cellular Biology, National Taiwan University, No. 1 Sec. 4 Roosevelt Road, Taipei 10617, Taiwan.
Chin-Hua TaiInstitute of Molecular and Cellular Biology, National Taiwan University, No. 1 Sec. 4 Roosevelt Road, Taipei 10617, Taiwan.
Meng-Ting YehInstitute of Molecular and Cellular Biology, National Taiwan University, No. 1 Sec. 4 Roosevelt Road, Taipei 10617, Taiwan.
Yu-Chen ChenInstitute of Molecular and Cellular Biology, National Taiwan University, No. 1 Sec. 4 Roosevelt Road, Taipei 10617, Taiwan.
Po-Cheng YangInstitute of Molecular and Cellular Biology, National Taiwan University, No. 1 Sec. 4 Roosevelt Road, Taipei 10617, Taiwan.ORCID 0009-0002-7247-4558
Chien-Ping YenInstitute of Molecular and Cellular Biology, National Taiwan University, No. 1 Sec. 4 Roosevelt Road, Taipei 10617, Taiwan.
Hong-Jhih ShenInstitute of Molecular and Cellular Biology, National Taiwan University, No. 1 Sec. 4 Roosevelt Road, Taipei 10617, Taiwan.
Chan-Hsien YehGraduate Institute of Medical Genomics and Proteomics, National Taiwan University College of Medicine, Taipei 10051, Taiwan.
Hung-Chih KuoGraduate Institute of Medical Genomics and Proteomics, National Taiwan University College of Medicine, Taipei 10051, Taiwan.ORCID 0000-0003-1336-1203
Der-Sheng HanDepartment of Physical Medicine and Rehabilitation, National Taiwan University Hospital, Bei-Hu Branch, Taipei 10051, Taiwan.
Hsueh-Ping Catherine ChuInstitute of Molecular and Cellular Biology, National Taiwan University, No. 1 Sec. 4 Roosevelt Road, Taipei 10617, Taiwan.ORCID 0000-0002-0281-0942

Funding

National Health Research Institutes NHRI-EX111-11107SINational Health Research Institutes NHRI-EX112-11107SINational Health Research Institutes NHRI-EX113-11107SINational Health Research Institutes NHRI-EX114-11411SINational Science and Technology Council NSTC 112-2320-B-002-058National Science and Technology Council NSTC 112-2628-B-002-008National Science and Technology Council NSTC 113-2320-B-002-009National Science and Technology Council NSTC 113-2628-B-002-010-MY3National Taiwan University H-P.C.C.National Taiwan University NTU-111L7880National Taiwan University NTU-AS-112L104312National Taiwan University NTU-CDP-112L7721National Taiwan University NTU-CDP-113L7705
6 · The paper itself

Abstract

Telomeric repeat-containing RNA (TERRA), transcribed from subtelomeric regions toward telomeric ends, poses challenges in deciphering its complete sequences. Utilizing TERRA-capture RNA-seq and Oxford Nanopore direct RNA sequencing to acquire full-length TERRA, we annotate TERRA transcription regions in the human T2T-CHM13 reference genome. TERRA transcripts encompass hundreds to over a thousand nucleotides of telomeric repeats, predominantly originating from 61-29-37 bp repeat promoters enriched with H3K4me3, RNA Pol II, CTCF, and R-loops. We develop a bioinformatics tool, TERRA-QUANT, for quantifying TERRA using RNA-seq datasets and find that TERRA increases with age in blood, brain, and fibroblasts. TERRA upregulation in aged leukocytes is confirmed by reverse transcription quantitative polymerase chain reaction. Single-cell RNA-seq analysis demonstrates TERRA expression across various cell types, with upregulation observed in neurons during human embryonic stem cell differentiation. Additionally, TERRA levels are elevated in brain cells in the early stage of Alzheimer's disease. Our study provides evidence linking TERRA to human aging and diseases.

Indexed as

AgingCellular SenescenceRepetitive Sequences, Nucleic AcidRNATelomereAgedAlzheimer DiseaseBrainCCCTC-Binding FactorCell DifferentiationFibroblastsHistonesHumansPromoter Regions, GeneticRNA-SeqSingle-Cell AnalysisCCCTC-Binding FactorCTCF protein, humanHistonesRNA

Identifiers

PMID40637232
PMCPMC12242772

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.