Evidence map›Paper›PMID 40637227›Full record

ArticleNucleic acids research2025

Characterization of the MgsR-dependent promoter structure in Bacillus subtilis-application of a novel pHIS plasmid-based screening system for promoter element analysis.

Marco Harms, Hannes Wolfgramm, Maximilian Schedlowski, Stephan Michalik, Petra Hildebrandt, Marc Schaffer, Uwe Völker, Alexander Reder

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Marco HarmsInterfaculty Institute for Genetics and Functional Genomics, Center for Functional Genomics of Microbes, University Medicine Greifswald, Felix-Hausdorff-Str. 817475 Greifswald, Germany.
Hannes WolfgrammInterfaculty Institute for Genetics and Functional Genomics, Center for Functional Genomics of Microbes, University Medicine Greifswald, Felix-Hausdorff-Str. 817475 Greifswald, Germany.
Maximilian SchedlowskiInterfaculty Institute for Genetics and Functional Genomics, Center for Functional Genomics of Microbes, University Medicine Greifswald, Felix-Hausdorff-Str. 817475 Greifswald, Germany.
Stephan MichalikInterfaculty Institute for Genetics and Functional Genomics, Center for Functional Genomics of Microbes, University Medicine Greifswald, Felix-Hausdorff-Str. 817475 Greifswald, Germany.ORCID 0000-0002-6550-0132
Petra HildebrandtInterfaculty Institute for Genetics and Functional Genomics, Center for Functional Genomics of Microbes, University Medicine Greifswald, Felix-Hausdorff-Str. 817475 Greifswald, Germany.
Marc SchafferInterfaculty Institute for Genetics and Functional Genomics, Center for Functional Genomics of Microbes, University Medicine Greifswald, Felix-Hausdorff-Str. 817475 Greifswald, Germany.
Uwe VölkerInterfaculty Institute for Genetics and Functional Genomics, Center for Functional Genomics of Microbes, University Medicine Greifswald, Felix-Hausdorff-Str. 817475 Greifswald, Germany.ORCID 0000-0002-5689-3448
Alexander RederInterfaculty Institute for Genetics and Functional Genomics, Center for Functional Genomics of Microbes, University Medicine Greifswald, Felix-Hausdorff-Str. 817475 Greifswald, Germany.ORCID 0009-0005-3575-6849

Funding

Deutsche Forschungsgemeinschaft DFG-GRK 2719/1European Union's Horizon 2020 Programme 101073056European Union's Horizon 2020 Programme 813979Marie Skłodowska-Curie Actions
6 · The paper itself

Abstract

Transcriptional control is a finely tuned process, crucial for adaptation, differentiation, and survival. However, deciphering the contribution of promoter elements to overall promoter strength is tedious. We present the novel plasmid-based screening system pHIS (pHigh Screen) as a tool for easy and quantitative monitoring of promoter activity via fluorescence reporter gene expression for a reliable in vivo promoter analysis in real time. As a proof of principle, we first validated the functionality of our pHIS system by analyzing the known Spx operator of a SigA-type promoter in Bacillus subtilis. Then, the pHIS plasmid was used to characterize a new operator element, which was predicted by in silico analysis of SigB-type promoters controlled by the Spx paralogue MgsR. We found evidence for (i) an intrinsic promoter silencer element located upstream of the SigB-type -35 core region, preventing target gene expression in the absence of MgsR and (ii) an MgsR-dependent antagonist enhancer element necessary to overcome the negative element and to achieve full stress-dependent promoter activation. Our data demonstrate the universal applicability of our novel reporter gene system pHIS and support an RNA polymerase repositioning model for transcription initiation at MgsR-regulated SigB-type promoters in B. subtilis.

Indexed as

Bacillus subtilisBacterial ProteinsGene Expression Regulation, BacterialPlasmidsPromoter Regions, GeneticGenes, ReporterOperator Regions, GeneticSigma FactorTranscription, GeneticBacterial ProteinsSigma Factor

Identifiers

PMID40637227
PMCPMC12242773

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.