Evidence map›Paper›PMID 40634688›Full record

ArticleScientific reports2025

Shared genomic features of HIV+ diffuse large B-cell lymphoma in two African cohorts.

Sophia M Roush, Mishalan Moodley, Jenny Coelho, Samantha Beck, Amon Chirwa, Edwards Kasonkanji, Marriam Mponda, Maurice Mulenga, Tamiwe Tomoka, Hanri van Zijl and 8 more

Erratum issuedAbstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors.

Sophia M Roush *Department of Pathology and Laboratory Medicine, School of Medicine, University of North Carolina (UNC), Brinkhous-Bullitt Building Rm 822 160 Medical Dr, Chapel Hill, NC, 27514, USA.
Mishalan Moodley *Sequencing Core Facility, Division of the National Health Laboratory Service, National Institute for Communicable Diseases, Johannesburg, South Africa.
Jenny CoelhoDepartment of Pathology and Laboratory Medicine, School of Medicine, University of North Carolina (UNC), Brinkhous-Bullitt Building Rm 822 160 Medical Dr, Chapel Hill, NC, 27514, USA.
Samantha BeckDepartment of Pathology and Laboratory Medicine, School of Medicine, University of North Carolina (UNC), Brinkhous-Bullitt Building Rm 822 160 Medical Dr, Chapel Hill, NC, 27514, USA.
Amon ChirwaUNC Project Malawi, Lilongwe, Malawi.
Edwards KasonkanjiUNC Project Malawi, Lilongwe, Malawi.
Marriam MpondaUNC Project Malawi, Lilongwe, Malawi.
Maurice MulengaUNC Project Malawi, Lilongwe, Malawi.
Tamiwe TomokaUNC Project Malawi, Lilongwe, Malawi.
Hanri van ZijlDepartment of Molecular Medicine and Haematology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
Katherine HodkinsonDepartment of Molecular Medicine and Haematology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
Arshad IsmailSequencing Core Facility, Division of the National Health Laboratory Service, National Institute for Communicable Diseases, Johannesburg, South Africa.
Senzo MtshaliSequencing Core Facility, Division of the National Health Laboratory Service, National Institute for Communicable Diseases, Johannesburg, South Africa.
Jonathan FeatherstonSequencing Core Facility, Division of the National Health Laboratory Service, National Institute for Communicable Diseases, Johannesburg, South Africa.
Satish GopalNational Cancer Institute Center for Global Health, Rockville, MD, USA.
Matthew S PainschabUNC Lineberger Comprehensive Cancer Center, Chapel Hill, NC, USA.
Jenifer Vaughan *Department of Molecular Medicine and Haematology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
Yuri Fedoriw *Department of Pathology and Laboratory Medicine, School of Medicine, University of North Carolina (UNC), Brinkhous-Bullitt Building Rm 822 160 Medical Dr, Chapel Hill, NC, 27514, USA. yuri.fedoriw@unchealth.unc.edu.

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
The road to recovery: An assessment of patient-reported quality of life among cancer survivors in Malawi.U54CA254564 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DAMANIA, BLOSSOM A · 2020 to 2024
$6.1M
UNC Medical Scientist Training ProgramT32GM152316 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Toni Darville, Mohanish P Deshmukh · 2024 to 2026
$4.3M
UNC Integrated Translational Oncology Program (UNC-iTOP)T32CA244125 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI WILLIAM Y. KIM, Jen Jen Yeh · 2019 to 2026
$3.9M
Research training in HIV-related transfusion medicine and hematology in South AfricaD43TW010345 · FIC · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI UTE JENTSCH, EDWARD L MURPHY · 2017 to 2026
$3.0M
FIC NIH HHS D43 TW010345Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill Developmental AwardNCI NIH HHS CA016086-46S3NCI NIH HHS P30 CA016086NCI NIH HHS T32 CA244125NCI NIH HHS U54 CA254564NCI NIH HHS U54CA254564NIGMS NIH HHS T32 GM152316
6 · The paper itself

Abstract

The number of people with HIV (PWH) in Africa is rising due to population growth and antiretroviral therapy (ART) availability, with diffuse large B-cell lymphoma (DLBCL) a major cause of mortality. HIV and ART alter DLBCL tumor biology, but few studies of DLBCL include PWH or African patients, limiting translation of emerging treatment strategies. Here, we performed whole exome sequencing of 48 tumors (40 HIV-positive [HIV+]) with paired germline of DLBCL patients from Malawi and South Africa. HIV + DLBCL tumors had distinct mutations depending on ART exposure, and there were several recurrent deleterious variants, with ANKRD11 mutations being prognostic. One tumor from each cohort had high tumor mutational burden and microsatellite-instability with PMS2 and ARID1A mutation. These findings suggest shared genomic characteristics among HIV + DLBCL in Africa, offering opportunities for tailored biomarkers and therapeutic targets for this underserved population.

Indexed as

HIV InfectionsLymphoma, Large B-Cell, DiffuseAdultCohort StudiesExome SequencingFemaleGenomicsHumansMalawiMaleMiddle AgedMutationSouth Africa

Identifiers

PMID40634688
PMCPMC12241603

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.