Evidence map›Paper›PMID 40634610›Full record

ArticleNature2025

The role of metabolism in shaping enzyme structures over 400 million years.

Oliver Lemke, Benjamin Murray Heineike, Sandra Viknander, Nir Cohen, Feiran Li, Jacob Lucas Steenwyk, Leonard Spranger, Federica Agostini, Cory Thomas Lee, Simran Kaur Aulakh and 6 more

Abstract read
In one paragraph

Article in Nature, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
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  5. Article
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  7. Review
  8. Evolutionary cell biology comes of age.Journal of cell science · 2025
    Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
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  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Oliver Lemke *Department of Biochemistry, Charité-Universitätsmedizin Berlin, Berlin, Germany.ORCID 0000-0002-5104-1836
Benjamin Murray Heineike *Department of Biochemistry, Charité-Universitätsmedizin Berlin, Berlin, Germany.
Sandra ViknanderDepartment of Life Sciences, Chalmers University of Technology, Gothenburg, Sweden.
Nir CohenDepartment of Biochemistry, Charité-Universitätsmedizin Berlin, Berlin, Germany.ORCID 0000-0002-5634-1643
Feiran LiDepartment of Life Sciences, Chalmers University of Technology, Gothenburg, Sweden.ORCID 0000-0001-9155-5260
Jacob Lucas SteenwykHoward Hughes Medical Institute, University of California Berkeley, Berkeley, CA, USA.ORCID 0000-0002-8436-595X
Leonard SprangerDepartment of Biochemistry, Charité-Universitätsmedizin Berlin, Berlin, Germany.ORCID 0000-0002-4316-2961
Federica AgostiniDepartment of Biochemistry, Charité-Universitätsmedizin Berlin, Berlin, Germany.ORCID 0000-0002-4255-4867
Cory Thomas LeeDepartment of Biochemistry, Charité-Universitätsmedizin Berlin, Berlin, Germany.
Simran Kaur AulakhCenter for Human Genetics, Nuffield Department of Medicine, University of Oxford, Oxford, UK.
Judith BermanShmunis School of Biomedical and Cancer Research, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv, Israel.ORCID 0000-0002-8577-0084
Antonis RokasDepartment of Biological Sciences, Vanderbilt University, Nashville, TN, USA.ORCID 0000-0002-7248-6551
Jens NielsenDepartment of Life Sciences, Chalmers University of Technology, Gothenburg, Sweden.
Toni Ingolf GossmannFaculty of Biochemical and Chemical Engineering, TU Dortmund University, Dortmund, Germany.ORCID 0000-0001-6609-4116
Aleksej ZelezniakDepartment of Life Sciences, Chalmers University of Technology, Gothenburg, Sweden.ORCID 0000-0002-3098-9441
Markus RalserDepartment of Biochemistry, Charité-Universitätsmedizin Berlin, Berlin, Germany. markus.ralser@charite.de.ORCID 0000-0001-9535-7413

Funding

Deciphering the phenotypic and genomic traits that underlie the evolution of pathogenicity differences among Aspergillus fumigatus and its close relativesR01AI153356 · NIAID · VANDERBILT UNIVERSITY · PI Antonis Rokas · 2022 to 2026
$3.5M
NIAID NIH HHS R01 AI153356Wellcome Trust
6 · The paper itself

Abstract

Advances in deep learning and AlphaFold2 have enabled the large-scale prediction of protein structures across species, opening avenues for studying protein function and evolution

Indexed as

EnzymesEvolution, MolecularAmino Acid SubstitutionBinding SitesBiocatalysisMetabolic Networks and PathwaysModels, MolecularPhylogenyProtein ConformationSelection, GeneticEnzymes

Identifiers

PMID40634610
PMCPMC12328220

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.