Evidence map›Paper›PMID 40634606›Full record

ArticleNature2025

Cryptic variation fuels plant phenotypic change through hierarchical epistasis.

Sophia G Zebell, Carlos Martí-Gómez, Blaine Fitzgerald, Camila P Cunha, Michael Lach, Brooke M Seman, Anat Hendelman, Simon Sretenovic, Yiping Qi, Madelaine Bartlett and 3 more

Abstract read
In one paragraph

Article in Nature, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
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  10. Inference and visualization of complex genotype-phenotype maps withbioRxiv : the preprint server for biology · 2025
    Article
  11. SlPLT6 controls ripening initiation and quality traits through modulation of histone acetylation and methylation in tomato.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Sophia G ZebellCold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.ORCID 0000-0003-1854-6389
Carlos Martí-GómezCold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
Blaine FitzgeraldCold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
Camila P CunhaDepartment of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel.
Michael LachDepartment of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel.ORCID 0009-0004-9084-0528
Brooke M SemanCold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.ORCID 0009-0002-0033-744X
Anat HendelmanCold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.ORCID 0000-0002-6089-710X
Simon SretenovicDepartment of Plant Science and Landscape Architecture, University of Maryland, College Park, MD, USA.ORCID 0000-0002-3080-5104
Yiping QiDepartment of Plant Science and Landscape Architecture, University of Maryland, College Park, MD, USA.
Madelaine BartlettSainsbury Laboratory Cambridge University (SLCU), Cambridge, UK.
Yuval EshedDepartment of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel. yuval.eshed@weizmann.ac.il.ORCID 0000-0001-8290-0018
David M McCandlishCold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA. mccandlish@cshl.edu.ORCID 0009-0006-1474-0407
Zachary B LippmanCold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA. lippman@cshl.edu.ORCID 0000-0001-7668-9025

Funding

Computational analysis of complex genetic interactionsR35GM133613 · NIGMS · COLD SPRING HARBOR LABORATORY · PI David Martin McCandlish · 2019 to 2026
$3.5M
Investigating Cis and Trans Regulation of Complex PhenotypesK99GM149939 · NIGMS · COLD SPRING HARBOR LABORATORY · PI ZEBELL, SOPHIA · 2023 to 2024
$238k
Howard Hughes Medical InstituteNIGMS NIH HHS K99 GM149939NIGMS NIH HHS R35 GM133613
6 · The paper itself

Abstract

Cryptic genetic variants exert minimal phenotypic effects alone but are hypothesized to form a vast reservoir of genetic diversity driving trait evolvability through epistatic interactions

Indexed as

Epistasis, GeneticGenetic VariationSolanum lycopersicumAllelesGene Expression Regulation, PlantGene Regulatory NetworksGenes, PlantGenotypeInflorescenceMutationPhenotype

Identifiers

PMID40634606
PMCPMC12282530

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.