Evidence map›Paper›PMID 40634432›Full record

ArticleScientific reports2025

PRELP functions via multiple interactions with intrinsically weak affinity relying on ECM anchoring and remodeling.

Hirofumi Kosuge, Makoto Nakakido, Susana de Vega, Shin-Ichi Ohnuma, Kouhei Tsumoto

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Integrated analysis of scRNA-seq and bulk RNA-seq identifies matrisome-related biomarkers for prognostic stratification and immune landscape in lung adenocarcinoma.The Korean journal of physiology & pharmacology : official journal of the Korean Physiological Society and the Korean Society of Pharmacology · 2026
    Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Hirofumi KosugeDepartment of Bioengineering, School of Engineering, The University of Tokyo, 7- 3-1, Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan.
Makoto NakakidoDepartment of Bioengineering, School of Engineering, The University of Tokyo, 7- 3-1, Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan.
Susana de VegaThe Institute of Medical Science, The University of Tokyo, 4-6-1, Shirokanedai, Minato-ku, Tokyo, 108-8639, Japan.
Shin-Ichi OhnumaThe Institute of Ophthalmology, University College London, London, EC1V 9EL, UK.
Kouhei TsumotoDepartment of Bioengineering, School of Engineering, The University of Tokyo, 7- 3-1, Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan. tsumoto@bioeng.t.u-tokyo.ac.jp.

Funding

Japan Agency for Medical Research and Development 22ama121033j0001Japan Society for the Promotion of Science 20H02531Japan Society for the Promotion of Science 22KJ0925
6 · The paper itself

Abstract

A small leucine-rich repeat proteoglycan PRELP is responsible for various biological functions. Here, to quantitatively assess the ligand binding of PRELP and its relevance to physiological activities, we validated the premise that PRELP multi-specifically binds to TGFβ1, IGFI-R, and p75NTR with relatively weak, micromolar range of affinities using surface plasmon resonance analysis. Results of a direct binding assay using N-terminal-truncated PRELP and chimeric PRELP and a dual injection assay to evaluate the binding regions and competitiveness suggested that PRELP interacts with the ligands via different but partially overlapping regions in the leucine-rich repeat domain. RNA-seq analysis revealed that PRELP greatly promotes gene expression of various extracellular matrix (ECM) components in A549 lung carcinoma cells, also at micromolar concentration. Since we reasoned that ECM anchoring contributes to an increase of apparent local concentrations of PRELP required for the weak affinity interactions, we validated the direct binding and co-localization of PRELP with ECM proteins using ELISA analysis and immunofluorescence staining. Results of this study suggest that PRELP modulates multiple interactions with intrinsically weak binding affinities through the anchoring to ECM proteins and also promotes the ECM protein expression to maintain the preferred environment to exert the molecular functions.

Indexed as

Extracellular MatrixProteoglycansA549 CellsExtracellular Matrix ProteinsHumansProtein BindingSurface Plasmon ResonanceTransforming Growth Factor beta1Extracellular Matrix ProteinsProteoglycansTransforming Growth Factor beta1

Identifiers

PMID40634432
PMCPMC12241546

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.