Evidence map›Paper›PMID 40634406›Full record

ArticleScientific data2025

DICOM datasets for reproducible neuroimaging research across manufacturers and software versions.

Christopher Rorden, Benoît Béranger, Hu Cheng, Matthew Clemence, Clément Debacker, Brice Fernandez, Yaroslav O Halchenko, Michael P Harms, Bharath Holla, Isaiah Innis and 14 more

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Christopher RordenMcCausland Center for Brain Imaging, Department of Psychology, University of South Carolina, Columbia, SC, 29208, USA. rorden@sc.edu.ORCID 0000-0002-7554-6142
Benoît BérangerCENIR, Paris Brain Institute - ICM, Hôpital Pitié-Salpêtrière de Sorbonne Université, Paris, France.
Hu ChengDepartment of Psychological and Brain Sciences, Indiana University, Bloomington, IN, 47405, USA.
Matthew ClemencePhilips Healthcare, Farnborough, UK.
Clément DebackerUniversité Paris Cité, Institute of Psychiatry and Neuroscience of Paris (IPNP), INSERM U1266, IMA-Brain team, 75014, Paris, France.
Brice FernandezGE HealthCare, Buc, France.
Yaroslav O HalchenkoDepartment of Psychological and Brain Sciences, Department of Computer Science, Hanover, NH, USA.
Michael P HarmsDepartment of Psychiatry, Washington University School of Medicine, St. Louis, MO, USA.
Bharath HollaDepartment of Psychiatry, Integrative Medicine, National Institute of Mental Health and Neuro-Sciences (NIMHANS), Bengaluru, India.
Isaiah InnisDepartment of Psychological and Brain Sciences, Indiana University, Bloomington, IN, 47405, USA.
Joost P A KuijerRadiology & Nuclear Medicine Amsterdam UMC, Amsterdam, The Netherlands.ORCID 0000-0002-4181-0427
Daniel LevitasDepartment of Psychological and Brain Sciences, Indiana University, Bloomington, IN, 47405, USA.ORCID 0000-0003-2279-7447
Krisanne LitinasFunctional MRI Laboratory, Department of Radiology, University of Michigan, Ann Arbor, MI, USA.
Jeffrey LuciCenter for Advanced Human Brain Imaging Research, Rutgers University, Piscataway, NJ, USA.
Roger Newman-NorlundMcCausland Center for Brain Imaging, Department of Psychology, University of South Carolina, Columbia, SC, 29208, USA.
Scott PeltierFunctional MRI Laboratory, Department of Radiology, University of Michigan, Ann Arbor, MI, USA.
Wolfgang RehwaldSiemens Medical Solutions USA, Inc., Malvern, PA, USA.
Robert I ReidDepartment of Radiology, Mayo Clinic, Rochester, MN, 56001, USA.
Baxter RogersVanderbilt University Institute of Imaging Science, Nashville, TN, 37232, USA.
Christopher G SchwarzDepartment of Radiology, Mayo Clinic, Rochester, MN, 56001, USA.ORCID 0000-0002-1466-8357
Jaemin ShinGE Healthcare, GE Healthcare, New York, NY, USA.
Venkatasubramanian GanesanDepartment of Psychiatry, Integrative Medicine, National Institute of Mental Health and Neuro-Sciences (NIMHANS), Bengaluru, India.
Sandeep GanjiDepartment of Radiology, Mayo Clinic, Rochester, MN, 56001, USA.
Paul S MorganSchool of Medicine, University of Nottingham, Nottingham, UK.

Funding

Telerehab for Aphasia (TERRA)P50DC014664 · NIDCD · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI FRIDRIKSSON, JULIUS · 2016 to 2025
$25.0M
Extending ezBIDS, NiiVue and dcm2niix for user-friendly cloud-based integration and visualizationRF1MH133701 · NIMH · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI RORDEN, CHRISTOPHER · 2023 to 2023
$2.0M
NIDCD NIH HHS P50 DC014664NIMH NIH HHS RF1 MH133701U.S. Department of Health & Human Services | NIH | National Institute of Mental Health (NIMH) RF1MH133701U.S. Department of Health & Human Services | NIH | National Institute on Deafness and Other Communication Disorders (NIDCD) P50DC014664
6 · The paper itself

Abstract

DICOM is an industry-standard for medical imaging data targeted at interoperability across systems. This enables transfer, storage and processing of imaging data regardless of the manufacturer. Pragmatically, manufacturers often store detailed acquisition parameters in private rather than public DICOM tags. In parallel, the DICOM standard itself has gradually evolved by introducing new public tags and properties to better capture emerging imaging technologies. Accurately extracting these details is essential for reproducible neuroimaging research. To address this need, we created a series of DICOM datasets illustrating how various manufacturers encode acquisition details that are critical for modern processing and analysis. These minimal test cases, covering CT and MR modalities, highlight manufacturer-specific conventions, including the use of public tags, private tags, and proprietary data structures. For each DICOM dataset, we provide corresponding NIfTI-formatted images with metadata JSON files following the BIDS standard, using consistent terminology to mitigate variations in how manufacturers encode acquisition details. Our repository provides validation datasets for any tool that is intended to extract acquisition details from medical imaging data.

Indexed as

NeuroimagingRadiology Information SystemsSoftwareHumansMagnetic Resonance Imaging

Identifiers

PMID40634406
PMCPMC12241320

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.