Evidence map›Paper›PMID 40634391›Full record

ArticleScientific reports2025

Bacteriome and mycobiome profiling of liquid feed for finisher pigs on commercial pig farms.

J T Cullen, P G Lawlor, P Cormican, F Crispie, H Slattery, G E Gardiner

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

J T CullenEco-Innovation Research Centre, Department of Science, South East Technological University, Cork Road Campus, County Waterford, X91 K0EK, Ireland.
P G LawlorTeagasc Pig Development Department, Animal and Grassland Research and Innovation Centre, Moorepark, Fermoy, County Cork, P61 C996, Ireland. Peadar.Lawlor@teagasc.ie.
P CormicanAnimal and Bioscience Research Department, Animal and Grassland Research and Innovation Centre, Teagasc, Grange, Dunsany, County Meath, C15 PW93, Ireland.
F CrispieTeagasc Food Research Centre, Moorepark, Fermoy, County Cork, P61 C996, Ireland.
H SlatteryTeagasc Food Research Centre, Moorepark, Fermoy, County Cork, P61 C996, Ireland.
G E GardinerEco-Innovation Research Centre, Department of Science, South East Technological University, Cork Road Campus, County Waterford, X91 K0EK, Ireland.

Funding

Irish Research Council GOIPG/2021/331
6 · The paper itself

Abstract

The aim was to assess the quality of liquid feed for grow-finisher pigs across commercial pig farms by profiling the bacteriome and mycobiome of samples and determining biogenic amine concentrations. Amplicon sequencing of liquid feed samples revealed that bacterial and fungal community structures were influenced by the farm of origin and sampling location (mixing tank/trough) on a given farm. Decreases in alpha-diversity of liquid feed between the mixing tank and the troughs corresponded with increased relative abundances of bacteria, particularly Lactobacillus, Weissella and Leuconostoc, as well as yeasts, including Kazachstania and Dipodascus, indicative of spontaneous fermentation. The concentration of biogenic amines, resulting from amino acid loss from the feed, which likely plays a role in poorer feed efficiency, also increased between the mixing tank and the troughs. The highest biogenic amine concentrations in the feed were found on the farm that had the highest lactic acid bacteria (LAB) and yeast counts. Both Lactobacillus and Kazachstania were correlated with biogenic amine concentrations in liquid feed, highlighting the unexplored role that LAB and yeast may play in amino acid decarboxylation and biogenic amine formation in liquid feed. Factors including the use of liquid co-products in diets also impacted the liquid feed microbiome.

Indexed as

Animal FeedBacteriaFungiMycobiomeAnimalsBiogenic AminesFarmsFermentationSwineBiogenic Amines

Identifiers

PMID40634391
PMCPMC12241619

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.