Evidence map›Paper›PMID 40634336›Full record

ArticleNature communications2025

Identification of RNF114 as ADPr-Ub reader through non-hydrolysable ubiquitinated ADP-ribose.

Max S Kloet, Chatrin Chatrin, Rishov Mukhopadhyay, Bianca D M van Tol, Rebecca Smith, Sarah A Rotman, Rayman T N Tjokrodirijo, Kang Zhu, Andrii Gorelik, Lucy Maginn and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. NADCell reports · 2026
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. ADPr gets a ubiquitin upgrade.Nature chemical biology · 2025
    Article
  16. Article
  17. The emergence of MARUbe - a hybrid ADP-ribose-ubiquitin modification.Nature reviews. Molecular cell biology · 2025
    Article
  18. Review
  19. Article
  20. The rise of ADP-ribose-ubiquitin.Nature structural & molecular biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Max S Kloet *Department of Cell and Chemical Biology, Leiden University Medical Centre, Leiden, the Netherlands.
Chatrin Chatrin *Sir William Dunn School of Pathology, University of Oxford, Oxford, UK. chatrin.chatrin@path.ox.ac.uk.ORCID http://orcid.org/0000-0002-5666-3175
Rishov Mukhopadhyay *Department of Cell and Chemical Biology, Leiden University Medical Centre, Leiden, the Netherlands.
Bianca D M van TolDepartment of Cell and Chemical Biology, Leiden University Medical Centre, Leiden, the Netherlands.ORCID http://orcid.org/0000-0001-7486-8652
Rebecca SmithSir William Dunn School of Pathology, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0002-1658-5635
Sarah A RotmanCentre for Proteomics and Metabolomics, Leiden University Medical Centre, Leiden, the Netherlands.
Rayman T N TjokrodirijoCentre for Proteomics and Metabolomics, Leiden University Medical Centre, Leiden, the Netherlands.
Kang ZhuSir William Dunn School of Pathology, University of Oxford, Oxford, UK.
Andrii GorelikSir William Dunn School of Pathology, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0001-5354-4042
Lucy MaginnSir William Dunn School of Pathology, University of Oxford, Oxford, UK.
Paul R ElliottDepartment of Biochemistry, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0002-7641-2103
Peter A van VeelenCentre for Proteomics and Metabolomics, Leiden University Medical Centre, Leiden, the Netherlands.ORCID http://orcid.org/0000-0002-7898-9408
Dragana AhelSir William Dunn School of Pathology, University of Oxford, Oxford, UK.
Ivan AhelSir William Dunn School of Pathology, University of Oxford, Oxford, UK. ivan.ahel@path.ox.ac.uk.ORCID http://orcid.org/0000-0002-9446-3756
Gerbrand J van der Heden van NoortDepartment of Cell and Chemical Biology, Leiden University Medical Centre, Leiden, the Netherlands. gvanderheden@lumc.nl.ORCID http://orcid.org/0000-0001-5955-6431

Funding

EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 101087582Nederlandse Organisatie voor Wetenschappelijk Onderzoek (Netherlands Organisation for Scientific Research) VI.Vidi.192.011Wellcome Trust
6 · The paper itself

Abstract

Crosstalk between the post-translational modification processes of ubiquitination and ADP-ribosylation occurs in DNA-damage- and immune-responses, in addition the physical linkage of ADP-ribose and ubiquitin is found during bacterial infection. Here, we study the ubiquitination of ADP-ribose mediated by human Deltex E3 ligases and the subsequent fate of the formed hybrid post-translational modification. We prepare a non-hydrolysable ADPr-Ub probe that we employ in a proteomics approach and identify RNF114 as an interacting protein. Using biophysical and biochemical experiments, we validate that RNF114 preferentially interacts with ubiquitinated ADP-ribose over non-modified ubiquitin. Subsequently, RNF114 can elongate the ubiquitinated ADP-ribose with a K11-linked ubiquitin chain. Using domain deletion analysis, we pinpoint the tandem zinc fingers and ubiquitin interacting motif (ZnF2 + ZnF3+UIM) domains of RNF114 to be crucial for recognising ubiquitinated ADP-ribose. Moreover, these domains are essential for the recruitment of RNF114 to the sites of laser-induced DNA damage.

Indexed as

Adenosine Diphosphate RiboseUbiquitinUbiquitin-Protein LigasesADP-RibosylationDNA DamageHEK293 CellsHumansProtein BindingProtein DomainsProtein Processing, Post-TranslationalUbiquitinationAdenosine Diphosphate RiboseUbiquitinUbiquitin-Protein Ligases

Identifiers

PMID40634336
PMCPMC12241653

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.