Evidence map›Paper›PMID 40634327›Full record

ArticleScientific data2025

Single-cell RNA sequencing dataset of hearts from wild type and Cyp26b1 knockout mouse embryos.

Zhao Zhang, Xueting Chen, Shuxin Su, Silian Chen, Li Pang, Juan Shen, Xiaodong Fang, Zhe Zhang

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Zhao Zhang *College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China.
Xueting Chen *College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China.ORCID 0009-0002-9671-9935
Shuxin SuCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China.
Silian ChenCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China.
Li PangBGI Research, Qingdao, 266555, China.
Juan ShenBGI Research, Shenzhen, 518083, China.
Xiaodong FangBGI Research, Sanya, 572025, China.ORCID 0000-0001-7061-3337
Zhe ZhangDepartment of Cardiology, Zhuhai People's Hospital (Zhuhai Clinical Medical College of Jinan University), Zhuhai, 519000, China. dr.zhezhang@foxmail.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

LVNC (Left Ventricular Non-Compaction), which is a type of cardiomyopathy characterized by an abnormal heart muscle structure. Retinoic acid (RA) is crucial for normal heart development, including the regulation of myocardial differentiation and chamber formation. Cyp26b1 plays a key role in regulating RA signaling by degrading RA. However, more targeted research is needed to directly link Cyp26b1 with LVNC pathology. To explore the effect of Cyp26b1 on heart development, we collected heart tissues from wild type (WT) and Cyp26b1 knockout (KO) mice at four time points (E10.5-E13.5) and performed single-cell RNA sequencing. We obtained 134,499 high-quality cells (57,923 WT and 62,488 KO) after filtering. The data quality was confirmed through various evaluation index and analytical methods mapping rates. Our initial analysis identified 10 major cell types in hearts, and differential expression analysis revealed the transcriptional change after deletion of Cyp26b1, particularly in cardiomyocytes. Collectively, these data offer a valuable resource for researchers investigating the role of Cyp26b1 in heart development.

Indexed as

HeartRetinoic Acid 4-HydroxylaseAnimalsMiceMice, KnockoutMyocardiumSequence Analysis, RNASingle-Cell AnalysisTretinoinCyp26b1 protein, mouseRetinoic Acid 4-HydroxylaseTretinoin

Identifiers

PMID40634327
PMCPMC12241566

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.