Evidence map›Paper›PMID 40634121›Full record

Trial reportDiabetic medicine : a journal of the British Diabetic Association2025

Concordance of molecular microbiology and conventional culture techniques for infected diabetic foot ulcer management.

Angela Oates, Sarah T Brown, Colin C Everett, Fran Game, Jane E Nixon, Tim Sloan, Michelle M Lister, Michael Backhouse, Benjamin A Lipsky, David Russell and 4 more

Abstract readRandomized Controlled TrialClinical Trial, Phase III
In one paragraph

Trial report in Diabetic medicine : a journal of the British Diabetic Association, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Swabs versus tissue samples for infected diabetic foot ulcers: the CODIFI2 RCT.Health technology assessment (Winchester, England) · 2025
    Trial
  2. Trial
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Angela OatesLeeds Beckett University, Leeds, UK.ORCID https://orcid.org/0000-0003-0519-4556
Sarah T BrownCTRU Faculty of Medicine and Health, University of Leeds, Leeds, UK.ORCID https://orcid.org/0000-0002-1840-3786
Colin C EverettCTRU Faculty of Medicine and Health, University of Leeds, Leeds, UK.ORCID https://orcid.org/0000-0002-9788-840X
Fran GameUniversity Hospitals of Derby and Burton NHS Foundation Trust, Derby, UK.ORCID https://orcid.org/0000-0002-5294-4789
Jane E NixonHealth Sciences, Faculty of Medicine and Health, University of Leeds, Leeds, UK.ORCID https://orcid.org/0000-0003-1705-7698
Tim SloanUniversity of Nottingham, Nottingham, UK.ORCID https://orcid.org/0000-0003-3668-7775
Michelle M ListerNottingham University Hospitals NHS Trust, Nottingham, UK.ORCID https://orcid.org/0000-0002-5221-4102
Michael BackhouseWarwick Clinical Trials Unit, University of Warwick, Warwick, UK.ORCID https://orcid.org/0000-0003-0056-8467
Benjamin A LipskyUniversity of Washington, Seattle, Washington State, USA.ORCID https://orcid.org/0000-0001-9886-5114
David RussellFaculty of Medicine and Health, University of Leeds, Leeds, UK.ORCID https://orcid.org/0000-0002-1293-5618
Howard CollierCTRU Faculty of Medicine and Health, University of Leeds, Leeds, UK.ORCID https://orcid.org/0000-0002-0107-0604
Joanna DennettCTRU Faculty of Medicine and Health, University of Leeds, Leeds, UK.ORCID https://orcid.org/0009-0009-1592-3119
Rachael GilbertsCTRU Faculty of Medicine and Health, University of Leeds, Leeds, UK.ORCID https://orcid.org/0000-0003-3326-7900
E Andrea NelsonGlasgow Caledonian University, Glasgow, UK.ORCID https://orcid.org/0000-0001-6741-3078

Funding

Health Technology Assessment Programme
6 · The paper itself

Abstract

aimThe management of infected diabetic foot ulcers (DFUs) requires balancing the need for timely interventions against the desire for targeted antibiotic therapy, which relies on laboratory results. This study aimed to evaluate concordance between molecular and conventional culture and sensitivity (C&S) methods in identifying bacteria from infected DFUs.

methodsThis study was conducted alongside CODIFI2, a Phase III randomised controlled trial comparing tissue sampling with wound swabbing. It assessed C&S and metagenomic 16S rRNA gene sequencing (M16S) in DFUs with suspected mild or moderate infections using both tissue and swab samples.

resultsIn 145 participants, C&S identified 248 microorganisms across 25 genera including eight anaerobic genera. M16S identified a greater number and diversity of microorganisms, detecting 455 across 40 genera, including 173 anaerobes from 15 distinct genera. No bacterial growth was reported in 25.5% (95% CI: 18.0%-32.3%) of C&S samples, whereas M16S identified at least one organism in all samples. While the observed agreement between methods was high (75%), Cohen's Kappa revealed low concordance overall, except for Pseudomonas spp. and Streptococcus spp. (Kappa ≥ 0.5).

conclusionsM16S detected a broader microbial spectrum, including fastidious anaerobes, but its low concordance with C&S and lack of antibiotic sensitivity data, challenge its suitability as a replacement for C&S in mild or moderate DFU infections. It may offer advantages in infections where increased sensitivity is beneficial, particularly where extended culture approaches are recommended to detect fastidious or low-abundance organisms. For mild to moderate DFU infections, our findings support continued reliance on conventional C&S testing.

Indexed as

Bacterial InfectionsDiabetic FootAdultAgedAnti-Bacterial AgentsBacteriaFemaleHumansMaleMiddle AgedRNA, Ribosomal, 16SAnti-Bacterial AgentsRNA, Ribosomal, 16S16S ribosomal RNAdiabetic footmicrobiologywound infection

Identifiers

PMID40634121
PMCPMC12352717

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.