Evidence map›Paper›PMID 40632236›Full record

ReviewApplied microbiology and biotechnology2025

The engineering toolbox of Parageobacillus thermoglucosidasius.

Marie Millgaard, Belinda Escher, Ivan Pogrebnyakov, Alex Toftgaard Nielsen

Abstract readReview
In one paragraph

Review in Applied microbiology and biotechnology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Marie MillgaardThe Novo Nordisk Foundation Center for Biosustainability, Building 220, Kemitorvet, 2800 Kgs, Lyngby, Denmark.ORCID http://orcid.org/0000-0002-2535-4847
Belinda EscherThe Novo Nordisk Foundation Center for Biosustainability, Building 220, Kemitorvet, 2800 Kgs, Lyngby, Denmark.ORCID http://orcid.org/0000-0001-5904-4911
Ivan PogrebnyakovThe Novo Nordisk Foundation Center for Biosustainability, Building 220, Kemitorvet, 2800 Kgs, Lyngby, Denmark.ORCID http://orcid.org/0000-0001-9354-2324
Alex Toftgaard NielsenThe Novo Nordisk Foundation Center for Biosustainability, Building 220, Kemitorvet, 2800 Kgs, Lyngby, Denmark. atn@biosustain.dtu.dk.ORCID http://orcid.org/0000-0001-6616-0187

Funding

Danmarks Frie Forskningsfond 103200448BHorizon 2020 101037009Novo Nordisk Fonden NNF20CC0035580Villum Fonden 40986
6 · The paper itself

Abstract

The thermophilic bacterium Parageobacillus thermoglucosidasius is considered a promising host for industrial microbial production. However, its genetic engineering toolbox is still under development. The focus of this review is to provide an organised summary of the currently available resources to facilitate the use of this organism. The article offers a comprehensive overview of regulatory parts used for the construction of genetic circuits and plasmids, including promoters, ribosome binding sites, terminators, antibiotic resistance genes, reporter genes, and other genetic elements of interest. Additionally, it examines the developments in P. thermoglucosidasius vector designs over the years. Here, vectors were categorised either as replicative vectors intended for gene expression, or integrative vectors intended for genomic engineering. The functionality of each vector was described, and their contributions to the progress of molecular tools available for P. thermoglucosidasius were evaluated. The review also summarises recent advancements in CRISPR-based systems relevant to this organism. Finally, this review discusses potential improvements that could further contribute to the expanding engineering toolbox of P. thermoglucosidasius, paving the way for more advanced applications. KEY POINTS: • The existing engineering toolbox for P. thermoglucosidasius contributes to the growing interest in using it as a thermophilic production host. • The engineering toolbox for P. thermoglucosidasius has expansion potential in genetic circuit parts and CRISPR-based tools. • Thermophilic hosts like P. thermoglucosidasius are in need of more thermostable reporter genes and thermostable selection markers.

Indexed as

Genetic EngineeringGenes, ReporterGenetic VectorsIndustrial MicrobiologyPlasmidsPromoter Regions, GeneticGenetic circuit partsGenetic engineeringGenome integration methodsParageobacillus thermoglucosidasiusThermophilic plasmid vectors

Identifiers

PMID40632236
PMCPMC12241125

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.