Evidence map›Paper›PMID 40631274›Full record

ArticlebioRxiv : the preprint server for biology2025

A Pipeline for Screening Small Molecule-Enhanced Protein Stability in A Bacterial Orphan Receptor.

James J Siclari, Denize C Favaro, Richard H Huang, Kevin H Gardner

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

James J SiclariStructural Biology Initiative, CUNY Advanced Science Research Center, New York, NY 10031.ORCID 0000-0001-5275-4515
Denize C FavaroStructural Biology Initiative, CUNY Advanced Science Research Center, New York, NY 10031.ORCID 0000-0001-5563-2548
Richard H HuangRedShift BioAnalytics, Inc., Boxborough, Massachusetts 01719.ORCID 0000-0002-4725-4564
Kevin H GardnerStructural Biology Initiative, CUNY Advanced Science Research Center, New York, NY 10031.ORCID 0000-0002-8671-2556

Funding

Summer Undergraduate Research Support - Ms. Anastasiia FisiukR01GM106239 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI GARDNER, KEVIN H · 2013 to 2024
$4.5M
PAS proteins: Study and application of signaling mechanismsR35GM156296 · NIGMS · ADVANCED SCIENCE RESEARCH CENTER · PI Kevin H Gardner · 2025 to 2026
$1.1M
NIGMS NIH HHS R01 GM106239NIGMS NIH HHS R35 GM156296
6 · The paper itself

Abstract

Bacterial one-component signaling proteins integrate sensory and gene regulation functions within the same polypeptide, creating powerful natural sensors of environmental conditions which can also be adapted into powerful tools for synthetic biology and biotechnology. A key sensor motif within many of these proteins is the Per-ARNT-Sim (PAS) domain, known for its conserved fold yet highly divergent sequences, allowing for a broad range of ligands to control PAS protein function by changes in small molecule binding occupancy or configuration. This diversity introduces a challenging step - identification of ligands for "orphan" PAS proteins which show signatures of ligand binding but no copurifying high-affinity bound small molecules - into characterization and engineering of such proteins. In this study, we characterized CU228, a putative PAS-HTH transcription factor from

Indexed as

bacterial one-component signalingligand bindingmicrofluidic modulation spectroscopyNMR spectroscopythermal shift assay

Identifiers

PMID40631274
PMCPMC12236518

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.