Evidence map›Paper›PMID 40631121›Full record

ArticlebioRxiv : the preprint server for biology2025

Yellow Fever Virus Interactomes Reveal Common and Divergent Strategies of Replication and Evolution for Mosquito-borne Flaviviruses.

Matthew W Kenaston, Liubov Cherkashchenko, Chase L S Skawinski, Adam T Fishburn, Vardhan Peddamallu, Cole J Florio, Avery E Robertson, Tamanash Bhattacharya, Janet M Young, Harmit S Malik and 1 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Matthew W KenastonDepartment of Microbiology and Molecular Genetics, University of California, Davis, CA.ORCID 0000-0001-8820-227X
Liubov CherkashchenkoDepartment of Microbiology and Molecular Genetics, University of California, Davis, CA.
Chase L S SkawinskiDepartment of Chemical Engineering, University of California, Davis, CA.
Adam T FishburnDepartment of Microbiology and Molecular Genetics, University of California, Davis, CA.ORCID 0000-0002-7344-402X
Vardhan PeddamalluDepartment of Chemical Engineering, University of California, Davis, CA.ORCID 0009-0001-8488-6384
Cole J FlorioDepartment of Microbiology and Molecular Genetics, University of California, Davis, CA.ORCID 0009-0003-5277-6433
Avery E RobertsonDepartment of Microbiology and Molecular Genetics, University of California, Davis, CA.
Tamanash BhattacharyaDivision of Basic Sciences, Fred Hutchinson Cancer Center, Seattle, WA.ORCID 0000-0002-8129-7568
Janet M YoungDivision of Basic Sciences, Fred Hutchinson Cancer Center, Seattle, WA.ORCID 0000-0001-8220-8427
Harmit S MalikDivision of Basic Sciences, Fred Hutchinson Cancer Center, Seattle, WA.ORCID 0000-0001-6005-0016
Priya S ShahDepartment of Microbiology and Molecular Genetics, University of California, Davis, CA.ORCID 0000-0001-7518-2839

Funding

Project 3U54AI170792 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JENNIFER A DOUDNA · 2022 to 2026
$35.7M
Molecular mechanisms linking viral replication and neuropathogenesisR01AI170857 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Priya Shirish Shah · 2023 to 2026
$2.1M
Zeiss LSM 880 with Fast Mode Airyscan for the MCB LM Imaging FacilityS10OD026702 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI PADDY, MICHAEL R · 2019 to 2019
$600k
Conserved molecular mechanisms of replication for mosquito-borne flavivirusesR21AI168716 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI SHAH, PRIYA SHIRISH · 2022 to 2023
$440k
NIAID NIH HHS R01 AI170857NIAID NIH HHS R21 AI168716NIAID NIH HHS U54 AI170792NIH HHS S10 OD026702
6 · The paper itself

Abstract

Pathogenic mosquito-borne flaviviruses infect mosquito and human hosts, relying on host protein interactions to replicate, evade immunity, and mediate pathogenesis. Prior proteomic studies mapped such interactions for some flaviviruses, but yellow fever virus (YFV)-a pathogen of resurgent concern-remains understudied. Here, we map YFV interactomes in human and mosquito cells to identify interactions common among divergent flaviviruses or unique to YFV. Functional assays reveal a previously unrecognized YFV restriction factor: RBBP6 inhibits YFV genome replication by interacting with the viral polymerase NS5. We enhance the identification of dual-host interactions using structural modeling and holistic network integration. Extending our holistic approach to other flavivirus interactomes, we distinguish conserved mechanisms of host targeting from those unique to YFV. Contrary to expectations that conserved viral proteins lead to conserved protein interactions, we find that Capsid, a divergent structural protein, shares more host interactions than NS5, a conserved enzyme. Integrating proteomics with complementary analyses defines new principles of host-targeting strategies across flavivirus and host evolution, offering a versatile resource for navigating the complex landscape of flavivirus biology.

Indexed as

flavivirusesintegrative proteomicssystems biologyvirus-host evolutionvirus-host interactionyellow fever virus

Identifiers

PMID40631121
PMCPMC12236827

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.