ArticleResearch square2025
hmmibd-rs: An enhanced hmmIBD implementation for parallelizable identity-by-descent detection from large-scale Plasmodium genomic data.
Article in Research square, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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Abstract
Background: Identity-by-descent (IBD), which describes recent genetic co-ancestry between pairs of genomes, is a fundamental concept in population genomics. It has been used to estimate genetic relatedness, detect selection signals, and understand population demography. The IBD detection method Methods: We developed an enhanced implementation of Results: Our new implementation significantly reduces IBD detection computation time nearly linearly with the increased number of CPU threads used; using 128 threads shortens IBD detection time from 5.2 days to 1.3 hours for 220 million pairs of simulated Conclusion:
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