Evidence map›Paper›PMID 40629880›Full record

ArticleRenal failure2025

Single-cell chromatin accessibility landscape of T cell-mediated rejection and BK polyomavirus-associated nephropathy after kidney transplantation.

Jingyi Zhou, Hao Wu, Qin Zhou, Xudong Fu, Jianghua Chen

Abstract read
In one paragraph

Article in Renal failure, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jingyi ZhouKidney Disease Center, The First Affiliated Hospital, College of Medicine, Zhejiang University, Hangzhou, China.
Hao WuCenter of Stem Cell and Regenerative Medicine and Bone Marrow Transplantation Center, The First Affiliated Hospital, College of Medicine, Zhejiang University, Hangzhou, China.
Qin ZhouKidney Disease Center, The First Affiliated Hospital, College of Medicine, Zhejiang University, Hangzhou, China.
Xudong FuCenter of Stem Cell and Regenerative Medicine and Bone Marrow Transplantation Center, The First Affiliated Hospital, College of Medicine, Zhejiang University, Hangzhou, China.
Jianghua ChenKidney Disease Center, The First Affiliated Hospital, College of Medicine, Zhejiang University, Hangzhou, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Both T cell-mediated rejection (TCMR) and BK polyomavirus-associated nephropathy (BKPyVAN) pose significant obstacles to successful kidney transplantation, emphasizing the importance of their accurate diagnosis for prompt medical intervention. Unfortunately, our current understanding of the molecular characteristics of these conditions is still limited, hampering the development of diagnosis strategies. In this study, we employed the single-cell assay for transposase-accessible chromatin sequencing (scATAC-seq) to unravel the chromatin landscape of kidney samples affected by either TCMR or BKPyVAN at the single-cell level. Our findings uncover distinct cell population dynamics and identify enriched pathways in the chromatin changes of TCMR and BKPyVAN samples, providing resources for further characterization of their molecular features. Furthermore, we analyzed the upstream transcriptional and epigenetic regulators modulating the chromatin landscape of each cell population in TCMR and BKPyVAN samples, shedding light on the identification of molecular mechanisms regulating TCMR and BKPyVAN.

Indexed as

BK VirusChromatinGraft RejectionKidney DiseasesKidney TransplantationPolyomavirus InfectionsT-LymphocytesTumor Virus InfectionsFemaleHumansKidneyMaleMiddle AgedSingle-Cell AnalysisChromatinBK polyomavirus-associated nephropathychromatin accessibilityKidney transplantationsingle-cell ATAC-seqT cell-mediated rejection

Identifiers

PMID40629880
PMCPMC12243012

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.