Evidence map›Paper›PMID 40629713›Full record

ArticleGeobiology

Impacts on Sedimentary Microbial Communities Related to Temporal Changes in Trace Metal Concentrations.

Christopher K Jones, Jessica M Labonté, Lauren A Haygood, Marta E Torres, Gerhard Bohrmann, Timothy W Lyons, Natascha Riedinger

Abstract read
In one paragraph

Article in Geobiology. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Christopher K JonesDepartment of Earth and Planetary Sciences, University of California, Riverside, Riverside, California, USA.ORCID 0000-0003-3739-2995
Jessica M LabontéDepartment of Marine Biology, Texas A&M University at Galveston, Galveston, Texas, USA.ORCID 0000-0003-0236-7634
Lauren A HaygoodBoone Pickens School of Geology, Oklahoma State University, Stillwater, Oklahoma, USA.ORCID 0000-0002-4060-0700
Marta E TorresCollege of Earth, Ocean, and Atmospheric Sciences, Oregon State University, Corvallis, Oregon, USA.ORCID 0000-0001-7284-733X
Gerhard BohrmannMARUM-Center for Marine Environmental Sciences and Faculty of Geosciences, University of Bremen, Bremen, Germany.ORCID 0000-0001-9976-4948
Timothy W LyonsDepartment of Earth and Planetary Sciences, University of California, Riverside, Riverside, California, USA.ORCID 0000-0001-8674-6775
Natascha RiedingerBoone Pickens School of Geology, Oklahoma State University, Stillwater, Oklahoma, USA.ORCID 0000-0001-6766-0749

Funding

Bundesministerium für Bildung und Forschung 03G0880ADeutsche Forschungsgemeinschaft 390741603Hanse-Wissenschaftskolleg - Institute for Advanced StudyNASANational Science Foundation 1847509
6 · The paper itself

Abstract

Microbial processes in marine sediments drive changes in redox conditions, ultimately controlling the cycling of elements between the dissolved and solid phases. The microbial community driving these cycles depends on trace metals, but it can also be inhibited at elevated metal concentrations. During diagenesis, many trace elements are released from iron (Fe) and manganese (Mn) (oxyhydr)oxides, potentially affecting microbial metabolisms. Here we present results from geochemical and microbiological analyses of samples collected during R/V Polarstern Expedition PS119 to the East Scotia Ridge. The sediments are dominantly diatomaceous ooze with high contents of reactive Fe and Mn (oxyhydr)oxides and increased trace metal contents from nearby hydrothermal vents. Two multi-corer cores were sampled immediately after collection at five specific sediment depths (three splits each), sealed anaerobically in incubation bags, and analyzed in 4-month intervals post collection for major, minor, and trace metals and 16S rRNA gene sequencing. By isolating the sediment from overlying seawater during the incubation process, we simulated the in situ diagenetic processes of Fe and Mn oxide reduction. Our data show that Mn and trace metals, especially Mo, Ni, Tl, and Cu, are mobilized during early diagenesis. Analysis of 16S rRNA genes revealed shifts in the microbial community from Nitrososphaera and Nanoarchaeia to Bacteroidia and Bacilli alongside a marked decrease in richness, Pielou's evenness, and Shannon alpha diversity during the eight-month incubations. We statistically correlate the microbial community shift with the changes in porewater trace metal concentrations, revealing that Mn, Co, Ag, and Tl are driving the microbial compositions in these samples. In this organic matter limited but Fe and Mn (oxyhydr)oxide rich system, we simulate deeper diagenesis to peer into the role of changing Fe, Mn, and trace metal cycles and highlight the role of Fe and Mn (oxyhdyr)oxides as shuttles for trace metals to the deep biosphere. By identifying key metals that are diagenetically cycled and affect the in situ microbial community, we reveal feedbacks between metals and microbial communities that play important roles in biogeochemical cycles on Earth, provide insight into the origin and potential evolution of metabolic pathways in the deep biosphere, and offer clues that may aid in our understanding of Earth's history and potentially beyond.

Indexed as

BacteriaGeologic SedimentsMetalsMicrobiotaTrace ElementsArchaeaDNA, BacterialDNA, RibosomalRNA, Ribosomal, 16SSeawaterSequence Analysis, DNADNA, BacterialDNA, RibosomalMetalsRNA, Ribosomal, 16STrace Elementsdiagenesismanganese (oxyhydr)oxidesmicrobial communitiestrace metals

Identifiers

PMID40629713
PMCPMC12238750

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.