ArticleThe plant genome2025
Chromosome-level genome of Zoysia sinica in the intertidal zone reveals genomic insights into waterlogging stress adaptation.
Article in The plant genome, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.
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Who cites it
4 citing papers in PubMed.
- Salt glands in exo-recretohalophytes: Development, physiological functions, and prospects for improving crop salt tolerance.Journal of integrative plant biology · 2026Review
- Root morphogenetic responses to waterlogging stress in plants: from structural reconfiguration to molecular regulatory mechanisms.Frontiers in plant science · 2026Review
- Genetic and genomic resources for turfgrasses: status, applications, and prospects.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Review
- Chromosome-level genome of Zoysia sinica in the intertidal zone reveals genomic insights into waterlogging stress adaptation.The plant genome · 2025Article
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Authors and funding
8 authors.
Funding
Abstract
Zoysia sinica is a perennial grass that thrives in intertidal zones, even under extreme waterlogging stress. In this study, we present a high-quality chromosome-level genome assembly of Z. sinica, with a total size of 312.67 Mb. Through genome annotation, we identified 29,551 protein-coding genes in the Z. sinica genome and re-annotated 32,925, 53,226, and 53,656 genes in the previously reported Zoysia genomes: Zoysia japonica, Zoysia matrella, and Zoysia pacifica, respectively. Genome divergence analysis indicated that the Zoysia species diverged relatively recently, approximately 3.63 million years ago. Comparative genomic analysis revealed an expansion of ethylene response factors and identified Z. sinica-specific genes related to the response to auxin and ethylene. Transcriptome data from intertidal environments with different levels of waterlogging showed significant upregulation of nitrate transporters (NRT2.2 and NRT2.4) in roots and genes involved in suberin biosynthesis in shoots. Additionally, various transporters were responsive to the intertidal environment. Our study provides insights into the intertidal adaptation of Zoysia species and offers a foundation for the development of stress-tolerant cultivars.
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