Evidence map›Paper›PMID 40629481›Full record

ReviewBiomarker research2025

Computation strategies and clinical applications in neoantigen discovery towards precision cancer immunotherapy.

Zhenchang Wang, Yu Gu, Xiao Sun, Hao Huang

Abstract readReview
In one paragraph

Review in Biomarker research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Personalized neoantigen mRNA vaccines for pancreatic cancer: the role of lipid nanoparticle delivery systems.Daru : journal of Faculty of Pharmacy, Tehran University of Medical Sciences · 2026
    Review
  2. Article
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  7. Bacterial Outer Membrane Vesicles in Potentiating Cancer Vaccines: Progress and Prospects.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  8. Review
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  13. Nanovaccines in gastrointestinal cancers.Frontiers in immunology · 2025
    Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Zhenchang WangInstitute of Microphysiological Systems, State Key Laboratory of Digital Medical Engineering, School of Biological Science and Medical Engineering, Southeast University, Nanjing, China.
Yu GuInstitute of Microphysiological Systems, State Key Laboratory of Digital Medical Engineering, School of Biological Science and Medical Engineering, Southeast University, Nanjing, China.
Xiao SunInstitute of Microphysiological Systems, State Key Laboratory of Digital Medical Engineering, School of Biological Science and Medical Engineering, Southeast University, Nanjing, China.
Hao HuangInstitute of Microphysiological Systems, State Key Laboratory of Digital Medical Engineering, School of Biological Science and Medical Engineering, Southeast University, Nanjing, China. haohuang@seu.edu.cn.

Funding

Fundamental Research Funds for the Central Universities 2242023K5005National Natural Science Foundation of China 62202098Natural Science Foundation of Jiangsu Province BK20220823Start-up Research Fund of Southeast University RF1028623140Zhishan Young Scholar Program of Southeast University 2242023R40017
6 · The paper itself

Abstract

Neoantigens, which are tumor-specific peptides generated by malignant cells, can be presented to T cells to elicit immune responses. Owing to their tumor-specific properties, neoantigens have emerged as one of the most promising biomarkers and targets for cancer immunotherapy. Previous studies have demonstrated their capacity to mediate tumor-specific immune responses in targeting and eliminating tumor cells while preserving normal cellular function. Driven by advancements in high-throughput sequencing technologies, mass spectrometry, and artificial intelligence, researchers have developed a growing interest in establishing more accurate neoantigen prediction algorithms. Here, we presented a comprehensive review of integrated neoantigen prediction algorithms, encompassing task definition, theoretical developments, benchmark datasets, cutting-edge applications, and future research directions. We systematically evaluated recent advancements in neoantigen source characterization and prediction algorithms, with particular emphasis on innovative methods for HLA-peptide binding and TCR recognition developed. Additionally, we explored the cutting-edge applications of neoantigens in personalized cancer vaccine design and adoptive cell therapies. We delineated potential research directions and the future prospects for neoantigen-based therapies, including integrating multi-omics data to discover universal neoantigens, addressing algorithmic generalization challenges and diversifying neoantigen validation methods.

Indexed as

Artificial intelligenceCancer immunotherapyNeoantigen discovery

Identifiers

PMID40629481
PMCPMC12239460

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.