Evidence map›Paper›PMID 40628709›Full record

ArticleNature communications2025

The role of gene duplication and paralog specialisation in the evolution of the mammalian PRPS complex.

Bibek R Karki, Austin C MacMillan, Sara Vicente-Muñoz, Kenneth D Greis, Lindsey E Romick, John T Cunningham

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Divergent evolution of the PRPS enzymes across the tree of life.bioRxiv : the preprint server for biology · 2026
    Article
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Bibek R KarkiDepartment of Cancer Biology, University of Cincinnati College of Medicine, Cincinnati, OH, USA.ORCID http://orcid.org/0000-0003-0578-9250
Austin C MacMillanDepartment of Cancer Biology, University of Cincinnati College of Medicine, Cincinnati, OH, USA.ORCID http://orcid.org/0000-0003-4240-1403
Sara Vicente-MuñozDivision of Pathology and Laboratory Medicine, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Kenneth D GreisDepartment of Cancer Biology, University of Cincinnati College of Medicine, Cincinnati, OH, USA.ORCID http://orcid.org/0000-0002-5316-3351
Lindsey E RomickDivision of Pathology and Laboratory Medicine, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.ORCID http://orcid.org/0000-0002-7252-1193
John T CunninghamDepartment of Cancer Biology, University of Cincinnati College of Medicine, Cincinnati, OH, USA. cunnijn@ucmail.uc.edu.ORCID http://orcid.org/0000-0001-6490-4533

Funding

Defining the biological roles of PRPS isozymes in normal and diseased settingsR35GM133561 · NIGMS · UNIVERSITY OF CINCINNATI · PI CUNNINGHAM, TOM · 2019 to 2023
$2.1M
Investigating Mechanisms of Deregulated Nucleotide Metabolism in CancerR01CA230904 · NCI · UNIVERSITY OF CINCINNATI · PI CUNNINGHAM, TOM · 2019 to 2023
$1.8M
An Orbitrap Mass Spectrometry System for the University of Cincinnati Proteomics LaboratoryS10OD026717 · OD · UNIVERSITY OF CINCINNATI · PI GREIS, KENNETH DONALD · 2019 to 2019
$816k
NCI NIH HHS R01 CA230904NIGMS NIH HHS R35 GM133561NIH HHS S10 OD026717U.S. Department of Health & Human Services | National Institutes of Health (NIH) S10OD026717U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R01CA230904U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R35GM133561
6 · The paper itself

Abstract

The phosphoribosyl pyrophosphate synthetase (PRPS) enzyme catalyzes a chokepoint reaction in nucleotide production, making it essential for life. Here, we show that the presence of multiple PRPS-encoding genes is a hallmark trait of eukaryotes, and we find that gains or losses of paralogs are associated with major branching events in the eukaryotic tree. We pinpoint the evolutionary origins and define the individual roles for each of the mammalian PRPS paralogs, which we demonstrate work together as a heterogeneous multicomponent complex. Employing isogenic cells representing all viable individual or combinatorial assembly states, we dissect the basic organizational principles of the enzyme complex and characterize the emergent properties responsible for paralog specialization, including new modes of regulation that govern complex assembly and activity in vivo. Collectively, our study demonstrates how evolution has transformed a single PRPS enzyme into a biochemical complex endowed with novel functional and regulatory features that fine-tune mammalian metabolism.

Indexed as

Evolution, MolecularGene DuplicationRibose-Phosphate PyrophosphokinaseAnimalsHumansMammalsMicePhylogenyRibose-Phosphate Pyrophosphokinase

Identifiers

PMID40628709
PMCPMC12238573

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.