Evidence map›Paper›PMID 40624602›Full record

ArticleHereditas2025

WMRCA + : a weighted majority rule-based clustering method for cancer subtype prediction using metabolic gene sets.

Guojun Liu, Zhaopo Zhu, Yongqiang Xing, Hu Meng, Khyber Shinwari, Ningkun Xiao, Guoqing Liu

Abstract read
In one paragraph

Article in Hereditas, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Involvement ofFrontiers in cell and developmental biology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Guojun LiuSchool of Life Science and Technology, Inner Mongolia University of Science and Technology, Baotou, China.
Zhaopo ZhuSchool of Life Science and Technology, Inner Mongolia University of Science and Technology, Baotou, China.
Yongqiang XingSchool of Life Science and Technology, Inner Mongolia University of Science and Technology, Baotou, China.
Hu MengSchool of Life Science and Technology, Inner Mongolia University of Science and Technology, Baotou, China.
Khyber ShinwariLaboratory of Molecular Biology of Microorganisms, Universidade São Francisco, Bragança Paulista, Brazil.
Ningkun XiaoDepartment of Immunochemistry, Institution of Chemical Engineering, Ural Federal University, Yekaterinburg, Russia.
Guoqing LiuSchool of Life Science and Technology, Inner Mongolia University of Science and Technology, Baotou, China. gqliu1010@163.com.

Funding

National Natural Science Foundation of China 62161043
6 · The paper itself

Abstract

Accurate classification of cancer subtypes plays a pivotal role in advancing precision medicine. In this study, we introduce WMRCA + , a novel clustering approach based on a weighted majority rule that integrates multi-omics data and incorporates metabolic gene sets to robustly determine the optimal number of clusters for tumor subtype identification. WMRCA + evaluates clustering performance using ten internal metrics and offers comprehensive functionalities for data preprocessing and visualization. When applied to The Cancer Genome Atlas (TCGA) lung cancer dataset using lipid metabolism-related gene sets, WMRCA + outperformed widely used clustering algorithms-including iCluster, SNF, NMF, CC, and CNMF-achieving an AUC of 0.947. WMRCA + provides robust, interpretable, and biologically meaningful clustering results, offering a valuable tool for improving the accuracy of cancer subtype prediction. The WMRCA + R package is freely available at https://github.com/guojunliu7/WMRCA .

Indexed as

Computational BiologyNeoplasmsSoftwareAlgorithmsCluster AnalysisHumansLung NeoplasmsCancer subtypesLipid metabolismMetabolic gene setsMulti-omics

Identifiers

PMID40624602
PMCPMC12235908

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.