Evidence map›Paper›PMID 40624252›Full record

ArticleNature biotechnology2026

High-precision cytosine base editors by evolving nucleic-acid-recognition hotspots in deaminase.

Yuan Wu, Yu-Lan Xiao, Weixin Tang

Abstract read
In one paragraph

Article in Nature biotechnology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
  2. Review
  3. Engineered Transformer Base Editor with Enhanced Editing Efficiency.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Advances and Applications of Plant Base Editing Technologies.International journal of molecular sciences · 2025
    Review
  10. Article
  11. Computational modeling of human genetic variants in mice.bioRxiv : the preprint server for biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Yuan Wu *Department of Chemistry, The University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0001-9805-2105
Yu-Lan Xiao *Department of Chemistry, The University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0003-1498-0890
Weixin TangDepartment of Chemistry, The University of Chicago, Chicago, IL, USA. weixintang@uchicago.edu.ORCID http://orcid.org/0000-0002-5739-5416

Funding

Spatially resolved high throughput lineage tracing by targeted in situ DNA diversificationR21GM141670 · NIGMS · UNIVERSITY OF CHICAGO · PI FEI, JINGYI, TANG, WEIXIN · 2021 to 2022
$451k
American Cancer Society (American Cancer Society, Inc.) RSG-22-043-01-ETDavid and Lucile Packard Foundation (David & Lucile Packard Foundation) 2022-74685Kinship Foundation SSP-2021-113NIGMS NIH HHS R21 GM141670U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R21GM141670
6 · The paper itself

Abstract

Base editors (BEs), covalent fusions of a cytosine or adenine deaminase with a nuclease-impaired CRISPR protein, mediate site-specific conversion of C:G to T:A (CBEs) or A:T to G:C (ABEs) in the genome. Existing BEs modify all cytosines or adenines within the editing window, which limits their precision. Here we engineer nucleotide and context specificity of the Escherichia coli transfer RNA-specific adenosine deaminase (TadA) to pinpoint cytosine editing. Strategically sampling multiple nucleic-acid-recognition hotspots through directed evolution, we develop 16 TadA-derived NCN-specific deaminases that cover every possible -1 and +1 context for a target cytosine, providing on-demand deaminase choices for editor customization. We apply these variants to (1) correct disease-associated T:A-to-C:G transitions documented by ClinVar, achieving greater accuracy than conventional CBEs in 81.5% of cases, and (2) model two cancer-driver mutations-KRAS

Indexed as

Adenosine DeaminaseCytosineGene EditingCRISPR-Cas SystemsEscherichia coliHumansMutationAdenosine DeaminaseCytosine

Identifiers

PMID40624252
PMCPMC12240478

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.