Evidence map›Paper›PMID 40624164›Full record

ArticleNature structural & molecular biology2025

Structural insights into transcriptional regulation by the helicase RECQL5.

Alfredo Jose Florez Ariza, Nicholas Z Lue, Patricia Grob, Benjamin Kaeser, Jie Fang, Susanne A Kassube, Eva Nogales

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Review
  3. Humanization of theGenes · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Alfredo Jose Florez Ariza *California Institute for Quantitative Biosciences (QB3), University of California, Berkeley, Berkeley, CA, USA.ORCID http://orcid.org/0000-0003-2429-4659
Nicholas Z Lue *California Institute for Quantitative Biosciences (QB3), University of California, Berkeley, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-4236-9127
Patricia GrobCalifornia Institute for Quantitative Biosciences (QB3), University of California, Berkeley, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-8330-8961
Benjamin KaeserDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA.
Jie FangHoward Hughes Medical Institute, University of California, Berkeley, Berkeley, CA, USA.
Susanne A KassubeBiophysics Graduate Group, University of California, Berkeley, Berkeley, CA, USA.ORCID http://orcid.org/0000-0003-4322-5886
Eva NogalesCalifornia Institute for Quantitative Biosciences (QB3), University of California, Berkeley, Berkeley, CA, USA. enogales@lbl.gov.ORCID http://orcid.org/0000-0001-9816-3681

Funding

Structural studies of function and regulation of microtubules and transcriptional gene expression machineryR35GM127018 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Eva Nogales · 2018 to 2026
$4.3M
Howard Hughes Medical InstituteNIGMS NIH HHS R35 GM127018
6 · The paper itself

Abstract

Transcription poses a major challenge for genome stability. The RECQL5 helicase helps safeguard genome integrity and is the only member of the human RecQ helicase family that directly binds to RNA polymerase II (Pol II) and affects its progression. While RECQL5 mitigates transcription stress in cells, the molecular mechanism underlying this phenomenon is unclear. Here, we use cryo-electron microscopy to determine the structures of stalled human Pol II elongation complexes (ECs) bound to RECQL5. Our structures reveal the molecular interactions stabilizing RECQL5 binding to the Pol II EC and highlight its role as a transcriptional roadblock. Additionally, we find that, in its nucleotide-free state, RECQL5 twists the downstream DNA in the EC and, upon nucleotide binding, undergoes a conformational change that allosterically induces Pol II toward a post-translocation state. We propose that this mechanism may help restart Pol II elongation and, therefore, contribute to reducing transcription stress.

Indexed as

Gene Expression RegulationRecQ HelicasesRNA Polymerase IITranscription, GeneticCryoelectron MicroscopyHumansModels, MolecularProtein BindingProtein ConformationRecQ HelicasesRECQL5 protein, humanRNA Polymerase II

Identifiers

PMID40624164
PMCPMC12262184

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.